Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 115.56165 * 2 1 4 4 C 1.52993 * 117.49649 * 214.30752 * 2 1 3 5 5 C 1.52999 * 60.00308 * 252.51075 * 4 2 1 6 6 H 1.09001 * 117.49947 * 107.51094 * 5 4 2 7 7 N 1.46890 * 117.50199 * 252.51260 * 5 4 2 8 8 C 1.46903 * 111.00241 * 223.60720 * 7 5 4 9 9 C 1.52997 * 109.47311 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.47375 * 55.00046 * 9 8 7 11 11 C 1.47206 * 109.47080 * 295.00010 * 9 8 7 12 12 N 5.98581 * 156.97337 * 137.21717 * 2 1 3 13 13 C 1.52997 * 109.47232 * 174.99912 * 9 8 7 14 14 C 1.50699 * 109.47337 * 184.99945 * 13 9 8 15 15 H 1.08001 * 119.99707 * 359.97438 * 14 13 9 16 16 C 1.37875 * 120.00057 * 180.02562 * 14 13 9 17 17 N 1.31519 * 120.00040 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99913 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47263 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47466 * 120.00047 * 18 16 14 21 21 H 1.48511 * 109.46827 * 239.99446 * 18 16 14 22 22 H 1.09005 * 109.47093 * 274.31229 * 1 2 3 23 23 H 1.09005 * 109.46998 * 34.30998 * 1 2 3 24 24 H 1.08999 * 109.47316 * 154.31014 * 1 2 3 25 25 H 1.09007 * 117.49751 * 145.02522 * 4 2 1 26 26 H 1.09003 * 117.52354 * 359.97438 * 4 2 1 27 27 H 1.00906 * 110.99915 * 347.55921 * 7 5 4 28 28 H 1.08994 * 109.46766 * 59.99709 * 8 7 5 29 29 H 1.09000 * 109.47050 * 299.99781 * 8 7 5 30 30 H 1.09004 * 109.47346 * 305.00019 * 13 9 8 31 31 H 1.09002 * 109.47196 * 64.99793 * 13 9 8 32 32 H 0.97001 * 119.99777 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 1.6115 -1.8587 1.2684 7 7 3.4966 -0.7897 1.4433 8 6 3.7453 -1.7023 2.5673 9 6 5.0631 -1.3263 3.2476 10 1 5.0351 -0.2762 3.5385 11 6 6.1784 -1.5470 2.3127 12 7 7.0389 -1.7184 1.5903 13 6 5.2608 -2.1949 4.4915 14 6 6.4947 -1.7426 5.2291 15 1 7.0796 -0.9183 4.8484 16 6 6.8775 -2.3817 6.3892 17 7 6.1655 -3.3858 6.8525 18 14 8.4066 -1.8206 7.3038 19 1 9.0250 -0.6801 6.5813 20 1 8.0338 -1.3940 8.6765 21 1 9.3770 -2.9422 7.3805 22 1 -0.3633 0.0773 1.0248 23 1 -0.3633 0.8489 -0.5793 24 1 -0.3634 -0.9261 -0.4455 25 1 3.1716 -0.8752 -1.2682 26 1 1.6115 -1.8590 -1.2679 27 1 4.2692 -0.7964 0.7943 28 1 3.8059 -2.7259 2.1975 29 1 2.9301 -1.6235 3.2865 30 1 4.3924 -2.0992 5.1434 31 1 5.3777 -3.2366 4.1925 32 1 6.4346 -3.8352 7.6689 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393229176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = 30.165097 kcal Electronic energy + Delta-G solvation = -12893.791908 eV Core-core repulsion = 10661.409996 eV Total energy + Delta-G solvation = -2232.381912 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.43731 -36.71808 -34.30350 -33.08677 -31.00023 -28.24169 -26.17991 -22.90291 -22.01208 -21.41884 -20.38001 -16.71244 -16.54969 -15.86719 -15.34746 -14.57220 -13.91442 -13.47542 -13.22430 -13.03679 -12.91892 -12.52662 -12.14652 -12.01116 -11.76982 -11.45503 -11.26562 -11.05801 -10.82949 -10.57929 -10.56493 -10.23723 -10.03610 -9.52983 -9.20909 -8.46251 -8.12888 -6.10129 -4.13204 3.28456 3.36644 3.41407 3.54535 3.59232 3.74508 4.11758 4.41561 4.77277 4.80493 4.93237 5.02686 5.28059 5.30150 5.52638 5.53027 5.68160 5.70773 5.74767 5.82053 5.97032 6.14065 6.25109 6.38941 6.53257 7.13104 7.38945 7.43484 7.52288 7.85203 8.22551 8.38262 8.91618 9.52429 11.00845 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.054532 B = 0.005809 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.335439 B = 4818.838134 C = 5089.400449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 H 0.106 0.894 4 C -0.207 4.207 5 C 0.030 3.970 6 H 0.111 0.889 7 N -0.662 5.662 8 C 0.069 3.931 9 C 0.006 3.994 10 H 0.111 0.889 11 C 0.241 3.759 12 N -0.476 5.476 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.340 0.660 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 4.371 -9.877 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.166 4.166 3 H 0.124 0.876 4 C -0.246 4.246 5 C -0.081 4.081 6 H 0.128 0.872 7 N -0.291 5.291 8 C -0.061 4.061 9 C -0.016 4.016 10 H 0.129 0.871 11 C -0.076 4.076 12 N -0.153 5.153 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.159 0.841 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.690 4.469 -10.409 14.907 hybrid contribution 0.894 -0.522 0.399 1.110 sum -8.795 3.947 -10.010 13.898 Atomic orbital electron populations 1.21343 0.92990 1.01544 1.01907 1.22534 0.94799 0.95325 1.03984 0.87602 1.23607 1.03062 1.02429 0.95505 1.22532 0.94557 1.00038 0.90963 0.87161 1.60310 1.03467 1.53153 1.12188 1.22136 0.97580 0.93659 0.92721 1.19347 0.84984 1.04500 0.92763 0.87081 1.29350 0.94146 0.91801 0.92292 1.81052 1.10829 1.10442 1.13024 1.19172 0.98401 0.94264 0.88829 1.21188 1.09908 1.17014 1.08308 0.92428 1.24955 0.96924 0.94812 0.97289 1.69951 1.38919 1.21936 1.22247 0.86532 0.83073 0.78762 0.79696 1.19665 1.20802 1.21002 0.92021 0.92380 0.92826 0.88978 0.88913 0.84095 0.94448 0.88864 0.94132 0.95712 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.19 37.16 0.38 -0.66 16 2 C -0.15 -1.54 6.34 -90.62 -0.57 -2.12 16 3 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.21 -2.17 9.87 -26.74 -0.26 -2.44 16 5 C 0.03 0.35 6.03 -67.72 -0.41 -0.05 16 6 H 0.11 1.23 7.90 -51.93 -0.41 0.82 16 7 N -0.66 -9.11 6.78 -106.73 -0.72 -9.84 16 8 C 0.07 1.03 4.97 -3.82 -0.02 1.01 16 9 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 10 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 11 C 0.24 4.91 12.98 -20.74 -0.27 4.64 16 12 N -0.48 -10.45 18.54 42.17 0.78 -9.67 16 13 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 14 C -0.53 -14.06 8.60 -34.44 -0.30 -14.35 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 25 H 0.09 0.99 8.09 -51.92 -0.42 0.57 16 26 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 27 H 0.34 4.84 7.59 -39.29 -0.30 4.55 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -29.05 281.30 -6.76 -35.81 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.87 Total: -0.19 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.90 Total: -11.85 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.80 Total: -44.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.05 -6.76 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393229176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.977 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds