Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55766 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31684 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.09007 * 117.49605 * 107.50099 * 5 4 2 7 7 N 1.46899 * 117.50080 * 252.49785 * 5 4 2 8 8 C 1.46901 * 111.00203 * 223.61000 * 7 5 4 9 9 C 1.52996 * 109.47190 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47041 * 304.99734 * 9 8 7 11 11 C 1.47192 * 109.47075 * 65.00271 * 9 8 7 12 12 N 5.54285 * 126.75941 * 76.48353 * 2 1 3 13 13 C 1.53005 * 109.46997 * 185.00076 * 9 8 7 14 14 C 1.50695 * 109.46836 * 175.00006 * 13 9 8 15 15 H 1.08001 * 120.00674 * 359.97438 * 14 13 9 16 16 C 1.37878 * 119.99805 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00387 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99991 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47080 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47012 * 119.99917 * 18 16 14 21 21 H 1.48501 * 109.47151 * 239.99773 * 18 16 14 22 22 H 1.09005 * 109.47034 * 154.29268 * 1 2 3 23 23 H 1.08996 * 109.47323 * 274.29157 * 1 2 3 24 24 H 1.08997 * 109.47719 * 34.29727 * 1 2 3 25 25 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 26 26 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 27 27 H 1.00900 * 110.99646 * 99.65541 * 7 5 4 28 28 H 1.08995 * 109.46869 * 300.00436 * 8 7 5 29 29 H 1.09003 * 109.47067 * 59.99904 * 8 7 5 30 30 H 1.08996 * 109.47027 * 295.00010 * 13 9 8 31 31 H 1.08997 * 109.47122 * 55.00361 * 13 9 8 32 32 H 0.96989 * 120.00379 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 1.6116 -1.8598 1.2678 7 7 3.4971 -0.7913 1.4432 8 6 3.7458 -1.7048 2.5665 9 6 5.0644 -1.3303 3.2460 10 1 5.8651 -1.3230 2.5064 11 6 4.9426 0.0062 3.8506 12 7 4.8472 1.0379 4.3177 13 6 5.3858 -2.3555 4.3354 14 6 6.7421 -2.0577 4.9209 15 1 7.3175 -1.2212 4.5527 16 6 7.2489 -2.8538 5.9261 17 7 6.5485 -3.8727 6.3743 18 14 8.9304 -2.4850 6.6515 19 1 9.5090 -1.2940 5.9794 20 1 8.7938 -2.2149 8.1053 21 1 9.8246 -3.6528 6.4469 22 1 -0.3633 -0.9260 -0.4458 23 1 -0.3634 0.0769 1.0247 24 1 -0.3634 0.8489 -0.5790 25 1 3.1715 -0.8751 -1.2684 26 1 1.6112 -1.8581 -1.2688 27 1 3.5010 0.1696 1.7508 28 1 2.9307 -1.6263 3.2858 29 1 3.8061 -2.7282 2.1961 30 1 4.6313 -2.3005 5.1200 31 1 5.3885 -3.3561 3.9032 32 1 6.9052 -4.4329 7.0811 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393229190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = 30.215134 kcal Electronic energy + Delta-G solvation = -12897.915809 eV Core-core repulsion = 10665.536067 eV Total energy + Delta-G solvation = -2232.379742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.40135 -36.71769 -34.30041 -33.08457 -30.98228 -28.28241 -26.22766 -22.98993 -21.92702 -21.13870 -20.55612 -16.72929 -16.51311 -16.03391 -15.14008 -14.58849 -14.11555 -13.48508 -13.19031 -13.04355 -12.88606 -12.53458 -12.15947 -12.03573 -11.70479 -11.46441 -11.25049 -11.04433 -10.81289 -10.56877 -10.52030 -10.20731 -10.00987 -9.52021 -9.21054 -8.46154 -8.19108 -6.09923 -4.13018 3.28563 3.36732 3.41502 3.54478 3.59998 3.76075 4.07564 4.41658 4.77239 4.78969 4.89629 5.17486 5.22593 5.28249 5.50526 5.52906 5.63318 5.73154 5.76394 5.88452 5.95743 6.15161 6.21857 6.38671 6.53643 7.14729 7.39614 7.43943 7.52560 7.85404 8.22775 8.38692 8.91833 9.52598 11.01074 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.058671 B = 0.005753 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.119649 B = 4865.881363 C = 5066.611240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.173 4.173 3 H 0.103 0.897 4 C -0.164 4.164 5 C 0.023 3.977 6 H 0.101 0.899 7 N -0.662 5.662 8 C 0.069 3.931 9 C 0.006 3.994 10 H 0.111 0.889 11 C 0.241 3.759 12 N -0.476 5.476 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.340 0.660 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 2.602 -11.809 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.192 4.192 3 H 0.121 0.879 4 C -0.203 4.203 5 C -0.088 4.088 6 H 0.119 0.881 7 N -0.293 5.293 8 C -0.060 4.060 9 C -0.016 4.016 10 H 0.129 0.871 11 C -0.076 4.076 12 N -0.153 5.153 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.159 0.841 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.002 3.661 -11.398 14.979 hybrid contribution 0.433 0.047 1.012 1.102 sum -8.568 3.708 -10.387 13.966 Atomic orbital electron populations 1.21354 0.92986 1.01816 1.01708 1.22705 0.95098 0.95067 1.06376 0.87888 1.23292 1.02082 1.00251 0.94632 1.22507 0.92044 1.00648 0.93587 0.88147 1.60325 1.31764 1.07348 1.29843 1.22131 0.95882 0.97512 0.90512 1.19342 0.97798 0.85580 0.98861 0.87095 1.29348 0.91799 0.94242 0.92191 1.81055 1.10112 1.13568 1.10613 1.19171 0.97387 0.92602 0.91502 1.21189 1.02217 1.13465 1.19547 0.92428 1.24954 0.97624 0.94927 0.96469 1.69943 1.37651 1.17138 1.28325 0.86533 0.84143 0.78358 0.79037 1.19665 1.21003 1.20801 0.92521 0.92417 0.92307 0.88361 0.89015 0.84098 0.94516 0.88879 0.95720 0.94138 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.19 37.16 0.38 -0.68 16 2 C -0.17 -1.80 6.21 -90.58 -0.56 -2.36 16 3 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.16 -1.72 10.10 -26.73 -0.27 -1.99 16 5 C 0.02 0.27 5.98 -67.68 -0.40 -0.14 16 6 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 7 N -0.66 -9.15 6.74 -106.69 -0.72 -9.87 16 8 C 0.07 1.05 4.97 -3.83 -0.02 1.03 16 9 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 10 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 11 C 0.24 4.92 12.98 -20.75 -0.27 4.65 16 12 N -0.48 -10.46 18.54 42.17 0.78 -9.68 16 13 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -14.08 8.60 -34.44 -0.30 -14.37 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.09 0.83 8.05 -51.93 -0.42 0.42 16 27 H 0.34 4.85 7.76 -39.29 -0.30 4.55 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -29.07 281.54 -6.75 -35.82 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.88 Total: -0.27 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.89 Total: -11.73 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.80 Total: -44.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.07 -6.75 -35.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393229190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds