Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.55766 * 2 1 4 4 C 1.53002 * 117.49773 * 214.31684 * 2 1 3 5 5 C 1.53000 * 60.02940 * 252.51785 * 4 2 1 6 6 H 1.09007 * 117.49605 * 107.50099 * 5 4 2 7 7 N 1.46899 * 117.50080 * 252.49785 * 5 4 2 8 8 C 1.46901 * 111.00203 * 223.61000 * 7 5 4 9 9 C 1.52996 * 109.47190 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47041 * 304.99734 * 9 8 7 11 11 C 1.47192 * 109.47075 * 65.00271 * 9 8 7 12 12 N 5.54285 * 126.75941 * 76.48353 * 2 1 3 13 13 C 1.53005 * 109.46997 * 185.00076 * 9 8 7 14 14 C 1.50695 * 109.46836 * 175.00006 * 13 9 8 15 15 H 1.08001 * 120.00674 * 359.97438 * 14 13 9 16 16 C 1.37878 * 119.99805 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00387 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99991 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47080 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47012 * 119.99917 * 18 16 14 21 21 H 1.48501 * 109.47151 * 239.99773 * 18 16 14 22 22 H 1.09005 * 109.47034 * 154.29268 * 1 2 3 23 23 H 1.08996 * 109.47323 * 274.29157 * 1 2 3 24 24 H 1.08997 * 109.47719 * 34.29727 * 1 2 3 25 25 H 1.09002 * 117.49918 * 145.01819 * 4 2 1 26 26 H 1.09002 * 117.49754 * 0.02562 * 4 2 1 27 27 H 1.00900 * 110.99646 * 99.65541 * 7 5 4 28 28 H 1.08995 * 109.46869 * 300.00436 * 8 7 5 29 29 H 1.09003 * 109.47067 * 59.99904 * 8 7 5 30 30 H 1.08996 * 109.47027 * 295.00010 * 13 9 8 31 31 H 1.08997 * 109.47122 * 55.00361 * 13 9 8 32 32 H 0.96989 * 120.00379 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7649 6 1 1.6116 -1.8598 1.2678 7 7 3.4971 -0.7913 1.4432 8 6 3.7458 -1.7048 2.5665 9 6 5.0644 -1.3303 3.2460 10 1 5.8651 -1.3230 2.5064 11 6 4.9426 0.0062 3.8506 12 7 4.8472 1.0379 4.3177 13 6 5.3858 -2.3555 4.3354 14 6 6.7421 -2.0577 4.9209 15 1 7.3175 -1.2212 4.5527 16 6 7.2489 -2.8538 5.9261 17 7 6.5485 -3.8727 6.3743 18 14 8.9304 -2.4850 6.6515 19 1 9.5090 -1.2940 5.9794 20 1 8.7938 -2.2149 8.1053 21 1 9.8246 -3.6528 6.4469 22 1 -0.3633 -0.9260 -0.4458 23 1 -0.3634 0.0769 1.0247 24 1 -0.3634 0.8489 -0.5790 25 1 3.1715 -0.8751 -1.2684 26 1 1.6112 -1.8581 -1.2688 27 1 3.5010 0.1696 1.7508 28 1 2.9307 -1.6263 3.2858 29 1 3.8061 -2.7282 2.1961 30 1 4.6313 -2.3005 5.1200 31 1 5.3885 -3.3561 3.9032 32 1 6.9052 -4.4329 7.0811 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393229190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = 12.625647 kcal Electronic energy + Delta-G solvation = -12898.678547 eV Core-core repulsion = 10665.536067 eV Total energy + Delta-G solvation = -2233.142479 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45605 -38.15228 -35.88486 -34.84073 -32.55551 -29.21810 -27.88490 -24.50430 -23.60922 -22.08141 -21.43005 -18.54344 -18.25826 -17.03762 -16.65876 -16.21822 -15.18249 -14.82935 -14.63751 -14.45571 -14.03121 -13.92788 -13.54031 -13.48202 -13.11083 -12.94428 -12.63971 -12.51246 -12.32812 -12.22645 -12.06262 -11.47443 -11.40017 -11.18116 -10.70933 -10.56110 -9.23570 -8.20179 -6.28512 1.39178 1.42075 1.52664 1.90785 1.93050 2.41206 2.89558 3.04010 3.14799 3.22662 3.95311 4.06232 4.17261 4.25381 4.44887 4.47575 4.57246 4.76713 4.93498 4.94385 4.98013 5.04326 5.16611 5.20845 5.45902 5.46517 5.61560 5.78675 6.06578 6.21097 6.27949 6.72516 6.86356 7.40296 8.91049 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.058671 B = 0.005753 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.119649 B = 4865.881363 C = 5066.611240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 H 0.098 0.902 4 C -0.156 4.156 5 C 0.004 3.996 6 H 0.106 0.894 7 N -0.664 5.664 8 C 0.081 3.919 9 C 0.019 3.981 10 H 0.123 0.877 11 C 0.251 3.749 12 N -0.504 5.504 13 C 0.038 3.962 14 C -0.540 4.540 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.335 0.665 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.001 0.999 31 H 0.037 0.963 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 2.686 -12.893 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.187 4.187 3 H 0.116 0.884 4 C -0.194 4.194 5 C -0.106 4.106 6 H 0.124 0.876 7 N -0.294 5.294 8 C -0.049 4.049 9 C -0.003 4.003 10 H 0.140 0.860 11 C -0.065 4.065 12 N -0.181 5.181 13 C -0.001 4.001 14 C -0.578 4.578 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.154 0.846 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.202 3.749 -12.500 15.968 hybrid contribution 0.468 0.031 1.323 1.403 sum -8.734 3.779 -11.177 14.680 Atomic orbital electron populations 1.21366 0.91618 1.02816 1.01896 1.22764 0.96130 0.94511 1.05288 0.88425 1.23339 1.02118 1.00502 0.93466 1.22614 0.91663 1.02001 0.94348 0.87636 1.60311 1.33377 1.06760 1.28963 1.21960 0.93718 0.98351 0.90835 1.19234 1.00233 0.83257 0.97594 0.85967 1.29679 0.90895 0.94384 0.91574 1.81054 1.11249 1.14529 1.11279 1.18993 0.95208 0.93808 0.92071 1.21587 1.03593 1.13036 1.19566 0.92794 1.25713 1.00956 0.94950 0.97105 1.70032 1.39225 1.18075 1.29032 0.85628 0.80401 0.78443 0.78005 1.19400 1.21084 1.19754 0.91564 0.92636 0.91306 0.88914 0.87339 0.84611 0.94656 0.87652 0.98032 0.94448 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.19 71.98 0.73 -1.08 16 2 C -0.17 -3.17 6.21 -10.77 -0.07 -3.23 16 3 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 4 C -0.16 -2.92 10.10 30.60 0.31 -2.61 16 5 C 0.00 0.08 5.98 44.94 0.27 0.35 16 6 H 0.11 2.21 7.90 -2.38 -0.02 2.19 16 7 N -0.66 -17.40 6.74 -491.45 -3.31 -20.71 16 8 C 0.08 2.36 4.97 86.30 0.43 2.79 16 9 C 0.02 0.68 2.42 -12.60 -0.03 0.64 16 10 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 11 C 0.25 10.10 12.98 89.43 1.16 11.26 16 12 N -0.50 -21.92 18.54 20.01 0.37 -21.55 16 13 C 0.04 1.76 4.42 29.85 0.13 1.90 16 14 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 15 H 0.05 2.86 7.59 -2.91 -0.02 2.83 16 16 C 0.01 0.64 5.46 84.65 0.46 1.10 16 17 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H 0.07 0.88 7.90 -2.38 -0.02 0.86 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.11 1.66 8.05 -2.39 -0.02 1.64 16 27 H 0.34 9.21 7.76 -89.69 -0.70 8.52 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.26 14.38 8.31 -92.72 -0.77 13.61 16 Total: -1.00 -60.43 281.54 3.39 -57.04 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.40 Total: 9.92 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.62 Total: -17.43 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -2.66 Total: -95.13 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -60.43 3.39 -57.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393229190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds