Wall clock time and date at job start Mon Mar 30 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47206 * 2 1 4 4 C 1.50698 * 109.46949 * 239.99763 * 2 1 3 5 5 H 1.08004 * 120.00275 * 240.00202 * 4 2 1 6 6 C 1.37879 * 120.00044 * 60.00577 * 4 2 1 7 7 N 1.31522 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00485 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46700 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47294 * 119.99818 * 8 6 4 11 11 H 1.48498 * 109.46989 * 240.00196 * 8 6 4 12 12 N 1.46896 * 109.46931 * 120.00440 * 2 1 3 13 13 C 1.47852 * 111.00151 * 301.43114 * 12 2 1 14 14 C 1.54903 * 104.79670 * 213.63765 * 13 12 2 15 15 C 1.55136 * 101.65415 * 37.07133 * 14 13 12 16 16 C 1.53000 * 110.70507 * 205.96007 * 15 14 13 17 17 C 1.47207 * 110.85703 * 82.79751 * 15 14 13 18 18 N 4.44031 * 131.41747 * 41.82700 * 2 1 3 19 19 C 1.47448 * 111.00144 * 180.59372 * 12 2 1 20 20 H 1.08990 * 109.47600 * 174.45760 * 1 2 3 21 21 H 1.09002 * 109.46689 * 294.45864 * 1 2 3 22 22 H 1.09002 * 109.46664 * 54.45295 * 1 2 3 23 23 H 0.97000 * 120.00339 * 179.97438 * 7 6 4 24 24 H 1.09002 * 110.37066 * 332.47225 * 13 12 2 25 25 H 1.09001 * 110.37043 * 94.80606 * 13 12 2 26 26 H 1.09009 * 110.98557 * 155.15936 * 14 13 12 27 27 H 1.08998 * 110.99151 * 278.97259 * 14 13 12 28 28 H 1.09000 * 109.46888 * 173.59986 * 16 15 14 29 29 H 1.08999 * 109.47080 * 293.59663 * 16 15 14 30 30 H 1.08997 * 109.46866 * 53.60161 * 16 15 14 31 31 H 1.09002 * 109.88923 * 242.66342 * 19 12 2 32 32 H 1.09000 * 109.88626 * 3.68098 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5865 -4.8166 11 1 3.1473 -0.1858 -4.8160 12 7 2.0196 -0.6926 1.1994 13 6 1.5176 -0.0424 2.4287 14 6 2.6584 -0.2160 3.4622 15 6 3.9169 -0.0437 2.5716 16 6 5.1143 -0.7770 3.1795 17 6 4.2277 1.3814 2.3735 18 7 4.4675 2.4813 2.2206 19 6 3.4935 -0.6999 1.2407 20 1 -0.3634 -1.0227 -0.0992 21 1 -0.3633 0.4255 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 0.7088 1.1614 -3.4844 24 1 1.3271 1.0154 2.2478 25 1 0.6113 -0.5379 2.7770 26 1 2.6128 0.5586 4.2278 27 1 2.6307 -1.2088 3.9112 28 1 5.9539 -0.7394 2.4854 29 1 5.3961 -0.2977 4.1170 30 1 4.8458 -1.8163 3.3689 31 1 3.8605 -1.7255 1.1996 32 1 3.8908 -0.1303 0.4006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606253539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:10 Heat of formation + Delta-G solvation = 25.459624 kcal Electronic energy + Delta-G solvation = -13944.389025 eV Core-core repulsion = 11711.803069 eV Total energy + Delta-G solvation = -2232.585956 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.26440 -35.92599 -34.14306 -32.07742 -29.65530 -28.39382 -25.51723 -24.80425 -22.07995 -21.65187 -19.41463 -16.82563 -16.14518 -15.26901 -14.79320 -14.17891 -13.67775 -13.49017 -13.12477 -12.79844 -12.59944 -12.13429 -12.07174 -11.90562 -11.69708 -11.17820 -10.97223 -10.81142 -10.75982 -10.60288 -10.37289 -10.18750 -10.00535 -9.79211 -8.91711 -8.45355 -7.27403 -6.01724 -4.06274 3.02476 3.07128 3.29718 3.37630 3.41470 4.10348 4.40600 4.78119 4.85104 5.07368 5.13685 5.32034 5.58687 5.67861 5.70955 5.86229 6.03096 6.12200 6.27625 6.37552 6.46769 6.54036 6.82228 7.01859 7.03934 7.47522 7.62737 7.82945 7.85901 8.11163 8.28516 8.52479 9.00175 9.58947 11.05522 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.009870 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.152528 B = 2836.271236 C = 3022.406515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.206 3.794 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.521 5.521 13 C 0.040 3.960 14 C -0.112 4.112 15 C 0.001 3.999 16 C -0.129 4.129 17 C 0.225 3.775 18 N -0.443 5.443 19 C 0.069 3.931 20 H 0.037 0.963 21 H 0.008 0.992 22 H 0.081 0.919 23 H 0.260 0.740 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.038 -4.534 10.408 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.015 0.985 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.245 5.245 13 C -0.088 4.088 14 C -0.151 4.151 15 C -0.003 4.003 16 C -0.187 4.187 17 C -0.093 4.093 18 N -0.118 5.118 19 C -0.061 4.061 20 H 0.056 0.944 21 H 0.027 0.973 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.123 -3.243 9.977 11.272 hybrid contribution 0.402 0.149 -0.916 1.012 sum 4.526 -3.094 9.061 10.591 Atomic orbital electron populations 1.21799 0.97517 1.00475 0.99037 1.19481 0.92586 0.91812 0.86144 0.98474 1.21145 1.31157 1.12311 0.89657 0.91789 1.24952 0.95200 0.95048 0.99104 1.69919 1.36879 1.22997 1.23347 0.86471 0.78610 0.79618 0.82910 1.19626 1.21023 1.21211 1.63798 1.05321 1.52854 1.02552 1.23041 0.97475 0.97639 0.90690 1.22862 0.92338 1.02833 0.97067 1.19637 0.97609 0.82845 1.00245 1.21727 0.95987 1.00496 1.00522 1.28973 0.92863 0.94655 0.92799 1.81148 1.09155 1.12569 1.08905 1.22845 0.90351 1.00225 0.92677 0.94431 0.97337 0.90055 0.93032 0.94385 0.90496 0.91126 0.88978 0.91723 0.92217 0.90246 0.89790 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 2 C 0.21 5.15 1.64 -68.87 -0.11 5.04 16 3 H 0.00 -0.07 8.11 -51.93 -0.42 -0.49 16 4 C -0.50 -13.62 7.71 -34.44 -0.27 -13.89 16 5 H 0.06 1.71 7.46 -52.48 -0.39 1.32 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.70 11.38 55.43 0.63 -25.06 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.52 -10.61 5.02 -224.67 -1.13 -11.73 16 13 C 0.04 0.68 5.11 -2.30 -0.01 0.67 16 14 C -0.11 -1.45 6.00 -24.60 -0.15 -1.60 16 15 C 0.00 0.02 0.86 -155.48 -0.13 -0.12 16 16 C -0.13 -1.34 8.44 37.16 0.31 -1.02 16 17 C 0.22 3.91 13.65 -20.76 -0.28 3.63 16 18 N -0.44 -8.77 18.54 42.15 0.78 -7.99 16 19 C 0.07 1.22 5.22 -2.84 -0.01 1.21 16 20 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.01 0.17 6.80 -51.93 -0.35 -0.18 16 22 H 0.08 2.18 6.24 -51.93 -0.32 1.86 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.04 0.72 7.59 -51.93 -0.39 0.33 16 25 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 26 H 0.07 0.83 8.03 -51.92 -0.42 0.41 16 27 H 0.09 0.99 8.02 -51.93 -0.42 0.57 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.35 7.82 -51.93 -0.41 0.94 16 32 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 LS Contribution 264.35 15.07 3.98 3.98 Total: -1.00 -30.12 264.35 -5.89 -36.02 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.72 Total: -4.09 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.42 Total: -7.40 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.28 Total: -44.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.12 -5.89 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds