Wall clock time and date at job start Mon Mar 30 2020 02:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47206 * 2 1 4 4 C 1.50698 * 109.46949 * 239.99763 * 2 1 3 5 5 H 1.08004 * 120.00275 * 240.00202 * 4 2 1 6 6 C 1.37879 * 120.00044 * 60.00577 * 4 2 1 7 7 N 1.31522 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00485 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46700 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47294 * 119.99818 * 8 6 4 11 11 H 1.48498 * 109.46989 * 240.00196 * 8 6 4 12 12 N 1.46896 * 109.46931 * 120.00440 * 2 1 3 13 13 C 1.47852 * 111.00151 * 301.43114 * 12 2 1 14 14 C 1.54903 * 104.79670 * 213.63765 * 13 12 2 15 15 C 1.55136 * 101.65415 * 37.07133 * 14 13 12 16 16 C 1.53000 * 110.70507 * 205.96007 * 15 14 13 17 17 C 1.47207 * 110.85703 * 82.79751 * 15 14 13 18 18 N 4.44031 * 131.41747 * 41.82700 * 2 1 3 19 19 C 1.47448 * 111.00144 * 180.59372 * 12 2 1 20 20 H 1.08990 * 109.47600 * 174.45760 * 1 2 3 21 21 H 1.09002 * 109.46689 * 294.45864 * 1 2 3 22 22 H 1.09002 * 109.46664 * 54.45295 * 1 2 3 23 23 H 0.97000 * 120.00339 * 179.97438 * 7 6 4 24 24 H 1.09002 * 110.37066 * 332.47225 * 13 12 2 25 25 H 1.09001 * 110.37043 * 94.80606 * 13 12 2 26 26 H 1.09009 * 110.98557 * 155.15936 * 14 13 12 27 27 H 1.08998 * 110.99151 * 278.97259 * 14 13 12 28 28 H 1.09000 * 109.46888 * 173.59986 * 16 15 14 29 29 H 1.08999 * 109.47080 * 293.59663 * 16 15 14 30 30 H 1.08997 * 109.46866 * 53.60161 * 16 15 14 31 31 H 1.09002 * 109.88923 * 242.66342 * 19 12 2 32 32 H 1.09000 * 109.88626 * 3.68098 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1472 -2.2864 -3.6038 10 1 1.1677 -1.5865 -4.8166 11 1 3.1473 -0.1858 -4.8160 12 7 2.0196 -0.6926 1.1994 13 6 1.5176 -0.0424 2.4287 14 6 2.6584 -0.2160 3.4622 15 6 3.9169 -0.0437 2.5716 16 6 5.1143 -0.7770 3.1795 17 6 4.2277 1.3814 2.3735 18 7 4.4675 2.4813 2.2206 19 6 3.4935 -0.6999 1.2407 20 1 -0.3634 -1.0227 -0.0992 21 1 -0.3633 0.4255 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 0.7088 1.1614 -3.4844 24 1 1.3271 1.0154 2.2478 25 1 0.6113 -0.5379 2.7770 26 1 2.6128 0.5586 4.2278 27 1 2.6307 -1.2088 3.9112 28 1 5.9539 -0.7394 2.4854 29 1 5.3961 -0.2977 4.1170 30 1 4.8458 -1.8163 3.3689 31 1 3.8605 -1.7255 1.1996 32 1 3.8908 -0.1303 0.4006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606253539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:10 Heat of formation + Delta-G solvation = 5.114609 kcal Electronic energy + Delta-G solvation = -13945.271252 eV Core-core repulsion = 11711.803069 eV Total energy + Delta-G solvation = -2233.468183 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64705 -37.48408 -35.84716 -33.81534 -31.11748 -29.99512 -27.27822 -26.26062 -23.59061 -23.05915 -21.14980 -18.42309 -17.93969 -16.93218 -16.36943 -15.69989 -15.18723 -14.90126 -14.84229 -14.05430 -13.97960 -13.68527 -13.54684 -13.42918 -12.98206 -12.79354 -12.68802 -12.52815 -12.31619 -12.08253 -12.02523 -11.76360 -11.63666 -11.43701 -10.92396 -10.55762 -8.96870 -8.12604 -6.24307 1.40696 1.42209 1.54323 1.64345 1.69912 2.41553 2.85188 3.16360 3.44971 3.61662 3.79214 4.01224 4.47535 4.52906 4.71951 4.84535 4.87198 4.93753 4.98687 5.07305 5.08671 5.16470 5.19709 5.22717 5.39055 5.46492 5.71847 5.76831 6.23047 6.35089 6.48851 6.65794 6.91153 7.45336 8.94170 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.035882 B = 0.009870 C = 0.009262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.152528 B = 2836.271236 C = 3022.406515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.213 3.787 3 H -0.052 1.052 4 C -0.513 4.513 5 H 0.066 0.934 6 C 0.005 3.995 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.287 1.287 12 N -0.524 5.524 13 C 0.031 3.969 14 C -0.095 4.095 15 C 0.007 3.993 16 C -0.123 4.123 17 C 0.238 3.762 18 N -0.495 5.495 19 C 0.066 3.934 20 H 0.037 0.963 21 H 0.030 0.970 22 H 0.051 0.949 23 H 0.259 0.741 24 H 0.010 0.990 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -6.770 12.055 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 H -0.035 1.035 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.194 4.194 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.183 1.183 10 H -0.206 1.206 11 H -0.214 1.214 12 N -0.248 5.248 13 C -0.097 4.097 14 C -0.134 4.134 15 C 0.002 3.998 16 C -0.181 4.181 17 C -0.078 4.078 18 N -0.171 5.171 19 C -0.064 4.064 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.028 0.972 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.950 -5.495 11.647 13.797 hybrid contribution 0.132 0.860 -1.402 1.650 sum 5.082 -4.634 10.245 12.340 Atomic orbital electron populations 1.21611 0.97231 0.99907 0.98941 1.19212 0.92799 0.89368 0.88062 1.03456 1.21466 1.30835 1.12218 0.90675 0.91605 1.25806 0.95488 0.95780 1.02280 1.70069 1.38154 1.24476 1.23879 0.85456 0.78148 0.78707 0.79075 1.18268 1.20586 1.21355 1.63752 1.07044 1.51998 1.02031 1.23190 0.99996 0.95855 0.90642 1.22911 0.88864 1.05771 0.95840 1.19877 1.00288 0.80772 0.98826 1.21785 0.93799 1.01592 1.00926 1.29763 0.91379 0.95329 0.91370 1.81147 1.11154 1.14389 1.10418 1.22905 0.88780 1.01337 0.93358 0.94381 0.95145 0.93023 0.93152 0.97205 0.88899 0.89217 0.85066 0.91820 0.90281 0.87356 0.87226 0.95227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.86 71.98 0.64 -5.25 16 2 C 0.21 10.93 1.64 44.17 0.07 11.01 16 3 H -0.05 -3.12 8.11 -2.39 -0.02 -3.14 16 4 C -0.51 -28.17 7.71 25.60 0.20 -27.97 16 5 H 0.07 3.50 7.46 -2.91 -0.02 3.48 16 6 C 0.00 0.25 5.30 84.65 0.45 0.70 16 7 N -0.93 -55.01 11.38 21.45 0.24 -54.77 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 N -0.52 -20.94 5.02 -864.74 -4.34 -25.28 16 13 C 0.03 1.00 5.11 86.77 0.44 1.45 16 14 C -0.10 -2.10 6.00 31.98 0.19 -1.91 16 15 C 0.01 0.18 0.86 -52.81 -0.05 0.14 16 16 C -0.12 -2.01 8.44 71.98 0.61 -1.40 16 17 C 0.24 8.18 13.65 89.44 1.22 9.40 16 18 N -0.50 -19.95 18.54 20.01 0.37 -19.58 16 19 C 0.07 2.26 5.22 86.64 0.45 2.71 16 20 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.03 1.32 6.80 -2.39 -0.02 1.30 16 22 H 0.05 2.86 6.24 -2.39 -0.01 2.84 16 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.01 0.37 7.59 -2.39 -0.02 0.35 16 25 H 0.09 2.71 8.10 -2.39 -0.02 2.69 16 26 H 0.09 1.72 8.03 -2.38 -0.02 1.71 16 27 H 0.13 1.99 8.02 -2.39 -0.02 1.97 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.11 3.20 7.82 -2.39 -0.02 3.19 16 32 H 0.03 1.25 6.76 -2.39 -0.02 1.24 16 Total: -1.00 -68.50 264.35 3.62 -64.88 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.09 Total: -0.20 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.23 Total: -11.13 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.73 Total: -99.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.50 3.62 -64.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.997 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds