Wall clock time and date at job start Mon Mar 30 2020 02:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46549 * 2 1 4 4 C 1.50703 * 109.46944 * 119.99508 * 2 1 3 5 5 H 1.07996 * 119.99627 * 114.69889 * 4 2 1 6 6 C 1.37881 * 120.00048 * 294.69640 * 4 2 1 7 7 N 1.31520 * 119.99958 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46980 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47330 * 120.00194 * 8 6 4 11 11 H 1.48500 * 109.47462 * 240.00379 * 8 6 4 12 12 N 1.46893 * 109.47448 * 239.99740 * 2 1 3 13 13 C 1.48566 * 111.00096 * 175.66951 * 12 2 1 14 14 C 1.54375 * 104.59179 * 200.95931 * 13 12 2 15 15 C 1.54255 * 105.06502 * 23.85578 * 14 13 12 16 16 C 1.53001 * 110.32667 * 118.99488 * 15 14 13 17 17 C 1.47206 * 110.32456 * 241.10315 * 15 14 13 18 18 N 5.43646 * 90.27213 * 242.22484 * 2 1 3 19 19 C 1.48561 * 110.99995 * 60.25131 * 12 2 1 20 20 H 1.09004 * 109.47023 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47709 * 299.99955 * 1 2 3 22 22 H 1.09007 * 109.47428 * 60.00668 * 1 2 3 23 23 H 0.96993 * 119.99799 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.40803 * 82.18118 * 13 12 2 25 25 H 1.09001 * 110.50739 * 319.79230 * 13 12 2 26 26 H 1.09000 * 110.32375 * 264.95646 * 14 13 12 27 27 H 1.09008 * 110.32200 * 142.74941 * 14 13 12 28 28 H 1.08999 * 109.46965 * 182.82935 * 16 15 14 29 29 H 1.09000 * 109.47122 * 302.83276 * 16 15 14 30 30 H 1.09000 * 109.46935 * 62.82622 * 16 15 14 31 31 H 1.08999 * 110.41225 * 40.26375 * 19 12 2 32 32 H 1.09007 * 110.41267 * 277.82037 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5807 -1.6356 1.1338 6 6 1.7917 -0.1788 2.4799 7 7 1.1234 0.9478 2.5976 8 14 2.4137 -1.0596 4.0051 9 1 3.1303 -2.2971 3.6045 10 1 3.3417 -0.1690 4.7473 11 1 1.2641 -1.4129 4.8762 12 7 2.0197 -0.6925 -1.1993 13 6 3.5011 -0.6223 -1.2871 14 6 3.8151 -0.8789 -2.7766 15 6 2.5305 -0.4797 -3.5317 16 6 2.8206 0.6632 -4.5067 17 6 1.9804 -1.6389 -4.2532 18 7 1.5558 -2.5334 -4.8100 19 6 1.5484 -0.0154 -2.4348 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 0.9545 1.3218 3.4764 24 1 3.9557 -1.3928 -0.6645 25 1 3.8550 0.3645 -0.9885 26 1 4.0382 -1.9332 -2.9403 27 1 4.6519 -0.2594 -3.0994 28 1 1.8951 0.9676 -4.9954 29 1 3.2386 1.5091 -3.9609 30 1 3.5349 0.3271 -5.2583 31 1 1.5949 1.0671 -2.3164 32 1 0.5327 -0.3290 -2.6764 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606253544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:11 Heat of formation + Delta-G solvation = 5.073402 kcal Electronic energy + Delta-G solvation = -13804.978892 eV Core-core repulsion = 11571.508923 eV Total energy + Delta-G solvation = -2233.469969 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54180 -37.49198 -35.80499 -33.74701 -31.42497 -29.47119 -27.48307 -26.43857 -23.75771 -22.31473 -21.31674 -18.42915 -18.17503 -16.89112 -15.91248 -15.87222 -15.00309 -14.78364 -14.70045 -14.50404 -14.06824 -13.68397 -13.28061 -13.14388 -13.05506 -12.80690 -12.74753 -12.52466 -12.24936 -12.20197 -11.90890 -11.71460 -11.57072 -11.50961 -10.89638 -10.51176 -9.04351 -8.11198 -6.20590 1.41539 1.44600 1.55420 1.74165 1.80601 2.44040 2.89103 3.19732 3.44046 3.66089 3.81251 4.13327 4.43404 4.55007 4.72735 4.77434 4.86386 4.89943 4.98897 5.05139 5.06094 5.10168 5.21829 5.29428 5.36483 5.46627 5.72303 5.74907 6.22633 6.34629 6.57600 6.65169 6.94359 7.48729 8.96457 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.008303 C = 0.008054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.330311 B = 3371.272026 C = 3475.701044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.209 3.791 3 H -0.016 1.016 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.527 5.527 13 C 0.045 3.955 14 C -0.101 4.101 15 C 0.033 3.967 16 C -0.130 4.130 17 C 0.252 3.748 18 N -0.491 5.491 19 C 0.044 3.956 20 H 0.026 0.974 21 H 0.051 0.949 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 2.252 -10.154 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.001 0.999 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.252 5.252 13 C -0.083 4.083 14 C -0.140 4.140 15 C 0.029 3.971 16 C -0.189 4.189 17 C -0.065 4.065 18 N -0.167 5.167 19 C -0.085 4.085 20 H 0.045 0.955 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.727 0.455 -10.817 11.813 hybrid contribution 0.246 0.648 1.478 1.632 sum 4.974 1.104 -9.339 10.638 Atomic orbital electron populations 1.21623 0.97822 0.98855 0.99540 1.19201 0.92271 0.91022 0.87372 0.99874 1.21372 1.34689 1.08052 0.91230 0.92882 1.25649 0.95527 0.95664 1.01710 1.70032 1.41477 1.20328 1.24178 0.85555 0.78022 0.78748 0.79595 1.19441 1.20433 1.20977 1.65433 1.07262 1.50591 1.01872 1.22899 0.88946 1.00327 0.96145 1.22522 0.95645 1.03025 0.92766 1.19194 0.95666 0.88381 0.93862 1.21917 1.03463 0.95421 0.98053 1.29322 0.91911 0.93699 0.91603 1.81156 1.10595 1.12341 1.12564 1.23184 0.98041 0.98030 0.89269 0.95509 0.93032 0.94696 0.92957 0.91661 0.94041 0.91030 0.86284 0.91102 0.88823 0.89812 0.91521 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.88 71.98 0.64 -5.10 16 2 C 0.21 10.16 1.73 44.17 0.08 10.24 16 3 H -0.02 -0.86 7.98 -2.38 -0.02 -0.88 16 4 C -0.51 -27.79 8.03 25.60 0.21 -27.59 16 5 H 0.05 2.90 7.41 -2.91 -0.02 2.88 16 6 C 0.01 0.72 5.32 84.65 0.45 1.17 16 7 N -0.92 -52.04 11.72 21.45 0.25 -51.79 16 8 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 N -0.53 -21.20 5.19 -860.70 -4.47 -25.66 16 13 C 0.04 1.53 5.81 86.45 0.50 2.03 16 14 C -0.10 -2.41 6.27 31.49 0.20 -2.21 16 15 C 0.03 0.81 0.95 -53.09 -0.05 0.76 16 16 C -0.13 -2.07 8.19 71.98 0.59 -1.48 16 17 C 0.25 7.46 13.60 89.44 1.22 8.67 16 18 N -0.49 -16.97 18.54 20.01 0.37 -16.60 16 19 C 0.04 1.39 4.42 86.45 0.38 1.78 16 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.05 2.71 6.50 -2.39 -0.02 2.70 16 22 H 0.03 1.43 6.95 -2.38 -0.02 1.42 16 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.06 2.40 7.74 -2.39 -0.02 2.38 16 25 H 0.04 1.43 7.91 -2.39 -0.02 1.41 16 26 H 0.07 1.75 7.70 -2.39 -0.02 1.73 16 27 H 0.12 1.96 7.71 -2.38 -0.02 1.94 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.98 7.69 -2.39 -0.02 1.96 16 32 H 0.07 2.27 7.37 -2.38 -0.02 2.25 16 Total: -1.00 -63.22 265.35 3.48 -59.74 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.09 Total: 0.72 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.21 Total: -11.73 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.84 Total: -94.05 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.22 3.48 -59.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.811 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds