Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46927 * 2 1 4 4 C 1.50704 * 109.47093 * 119.99467 * 2 1 3 5 5 H 1.08001 * 119.99875 * 94.58837 * 4 2 1 6 6 C 1.37877 * 120.00231 * 274.59505 * 4 2 1 7 7 N 1.31513 * 120.00203 * 6.13668 * 6 4 2 8 8 Si 1.86804 * 119.99860 * 186.14668 * 6 4 2 9 9 H 1.48507 * 109.46766 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47118 * 299.99291 * 8 6 4 11 11 H 1.48501 * 109.46943 * 59.99530 * 8 6 4 12 12 N 1.46892 * 109.47602 * 240.00037 * 2 1 3 13 13 C 1.47839 * 111.00190 * 180.84407 * 12 2 1 14 14 C 1.54911 * 104.79637 * 213.63518 * 13 12 2 15 15 C 1.55135 * 101.65473 * 37.06702 * 14 13 12 16 16 C 1.53000 * 110.70704 * 205.96533 * 15 14 13 17 17 C 1.47199 * 110.85409 * 82.79657 * 15 14 13 18 18 N 4.44028 * 116.28365 * 315.07171 * 2 1 3 19 19 C 1.47443 * 111.00400 * 59.99640 * 12 2 1 20 20 H 1.09000 * 109.47039 * 173.92922 * 1 2 3 21 21 H 1.08991 * 109.47102 * 293.93318 * 1 2 3 22 22 H 1.09002 * 109.46619 * 53.93307 * 1 2 3 23 23 H 0.97008 * 119.99896 * 355.07877 * 7 6 4 24 24 H 1.09002 * 110.37652 * 332.46097 * 13 12 2 25 25 H 1.09001 * 110.37851 * 94.80580 * 13 12 2 26 26 H 1.09005 * 110.98600 * 278.97437 * 14 13 12 27 27 H 1.09001 * 111.02253 * 155.17538 * 14 13 12 28 28 H 1.09002 * 109.46674 * 173.59788 * 16 15 14 29 29 H 1.08988 * 109.47050 * 293.59700 * 16 15 14 30 30 H 1.09002 * 109.47172 * 53.60095 * 16 15 14 31 31 H 1.09000 * 109.89359 * 242.67018 * 19 12 2 32 32 H 1.09003 * 109.88522 * 3.69320 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.2829 -1.7598 1.1838 6 6 2.1720 -0.0204 2.4161 7 7 1.7545 1.2234 2.5063 8 14 2.9544 -0.8524 3.8943 9 1 2.9874 0.0963 5.0363 10 1 2.1586 -2.0493 4.2675 11 1 4.3397 -1.2654 3.5541 12 7 2.0198 -0.6924 -1.1993 13 6 3.4975 -0.7297 -1.2233 14 6 3.8713 -0.6369 -2.7238 15 6 2.7949 0.3461 -3.2546 16 6 2.5412 0.1167 -4.7459 17 6 3.1908 1.7416 -3.0045 18 7 3.4962 2.8187 -2.8116 19 6 1.5471 -0.0240 -2.4256 20 1 -0.3633 -1.0219 -0.1087 21 1 -0.3633 0.4169 0.9392 22 1 -0.3632 0.6050 -0.8307 23 1 1.4141 1.6789 1.7203 24 1 3.9075 0.1196 -0.6769 25 1 3.8605 -1.6659 -0.7991 26 1 3.7851 -1.6094 -3.2085 27 1 4.8727 -0.2261 -2.8526 28 1 1.7055 0.7360 -5.0717 29 1 3.4336 0.3839 -5.3116 30 1 2.3035 -0.9333 -4.9167 31 1 0.9107 -0.7011 -2.9954 32 1 0.9909 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606253546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = 20.808553 kcal Electronic energy + Delta-G solvation = -13983.247611 eV Core-core repulsion = 11750.459969 eV Total energy + Delta-G solvation = -2232.787642 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36469 -36.04572 -34.37130 -32.02364 -30.12562 -27.84383 -26.00623 -24.40322 -22.36669 -21.33919 -19.73401 -17.38638 -16.32822 -15.35929 -14.43966 -13.95662 -13.79630 -13.70048 -13.35565 -12.86626 -12.71826 -12.49409 -12.25082 -11.83371 -11.49731 -11.25145 -11.03962 -10.87438 -10.79653 -10.56430 -10.50739 -10.21486 -10.16790 -10.05467 -8.66670 -8.27717 -7.37776 -6.36689 -4.07868 2.93299 2.97826 3.43524 3.44838 3.63958 4.00294 4.50088 4.68074 4.80059 4.98067 5.05090 5.37274 5.52932 5.61572 5.68887 5.78237 5.97707 6.01983 6.07644 6.22063 6.44711 6.52335 6.58334 6.70611 6.81112 7.03833 7.33747 7.74451 7.79781 7.95631 8.31566 8.57450 8.85985 9.64851 11.01013 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.040627 B = 0.009396 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.024014 B = 2979.420493 C = 2994.318439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.189 3.811 3 H 0.000 1.000 4 C -0.583 4.583 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.912 5.912 8 Si 1.069 2.931 9 H -0.284 1.284 10 H -0.287 1.287 11 H -0.288 1.288 12 N -0.517 5.517 13 C 0.062 3.938 14 C -0.117 4.117 15 C 0.005 3.995 16 C -0.129 4.129 17 C 0.222 3.778 18 N -0.439 5.439 19 C 0.054 3.946 20 H 0.047 0.953 21 H 0.052 0.948 22 H 0.015 0.985 23 H 0.268 0.732 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -5.056 -11.704 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.018 0.982 4 C -0.622 4.622 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.548 5.548 8 Si 0.897 3.103 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.214 1.214 12 N -0.242 5.242 13 C -0.066 4.066 14 C -0.156 4.156 15 C 0.000 4.000 16 C -0.187 4.187 17 C -0.096 4.096 18 N -0.114 5.114 19 C -0.076 4.076 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.034 0.966 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.239 -3.685 -9.756 10.666 hybrid contribution -0.242 0.342 -1.631 1.684 sum 1.997 -3.343 -11.387 12.035 Atomic orbital electron populations 1.21926 0.98378 0.99762 0.98899 1.19644 0.91710 0.92359 0.87999 0.98193 1.21821 1.47622 0.97842 0.94905 0.92425 1.25841 0.95308 0.96244 1.01312 1.70806 1.39276 1.12303 1.32414 0.83540 0.76134 0.75107 0.75497 1.20930 1.21349 1.21445 1.63817 1.07724 1.51146 1.01512 1.22775 0.89008 1.02027 0.92784 1.22953 0.96746 0.98211 0.97661 1.19562 0.98989 0.83307 0.98143 1.21735 1.02213 1.03195 0.91603 1.28975 0.93154 0.94585 0.92909 1.81169 1.08984 1.12613 1.08620 1.23042 0.93972 0.98287 0.92318 0.93369 0.92925 0.96571 0.92051 0.93731 0.90097 0.89047 0.90968 0.91873 0.92022 0.90205 0.89685 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.82 37.16 0.33 -2.69 16 2 C 0.19 4.67 1.27 -68.87 -0.09 4.59 16 3 H 0.00 0.01 6.91 -51.92 -0.36 -0.35 16 4 C -0.58 -15.93 7.64 -34.44 -0.26 -16.19 16 5 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 6 C 0.02 0.49 5.45 -17.82 -0.10 0.39 16 7 N -0.91 -27.56 13.63 55.43 0.76 -26.81 16 8 Si 1.07 25.09 29.91 -169.99 -5.08 20.00 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.52 -10.53 5.02 -224.68 -1.13 -11.66 16 13 C 0.06 1.16 5.64 -2.30 -0.01 1.15 16 14 C -0.12 -1.59 6.00 -24.59 -0.15 -1.74 16 15 C 0.00 0.06 0.86 -155.48 -0.13 -0.07 16 16 C -0.13 -1.27 8.44 37.16 0.31 -0.95 16 17 C 0.22 3.82 13.65 -20.76 -0.28 3.54 16 18 N -0.44 -8.67 18.54 42.15 0.78 -7.89 16 19 C 0.05 0.88 5.36 -2.84 -0.02 0.87 16 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.05 1.31 7.88 -51.93 -0.41 0.90 16 22 H 0.02 0.32 6.69 -51.93 -0.35 -0.03 16 23 H 0.27 8.17 6.42 -40.82 -0.26 7.90 16 24 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.03 8.02 -51.93 -0.42 0.61 16 27 H 0.07 0.91 8.03 -51.93 -0.42 0.50 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.14 -51.94 -0.42 0.12 16 30 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.09 1.20 7.82 -51.93 -0.41 0.79 16 32 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -31.17 265.60 -5.72 -36.90 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.65 Total: -3.43 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.40 Total: -11.11 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.41 Total: -46.36 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.17 -5.72 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.705 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds