Wall clock time and date at job start Mon Mar 30 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46927 * 2 1 4 4 C 1.50704 * 109.47093 * 119.99467 * 2 1 3 5 5 H 1.08001 * 119.99875 * 94.58837 * 4 2 1 6 6 C 1.37877 * 120.00231 * 274.59505 * 4 2 1 7 7 N 1.31513 * 120.00203 * 6.13668 * 6 4 2 8 8 Si 1.86804 * 119.99860 * 186.14668 * 6 4 2 9 9 H 1.48507 * 109.46766 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47118 * 299.99291 * 8 6 4 11 11 H 1.48501 * 109.46943 * 59.99530 * 8 6 4 12 12 N 1.46892 * 109.47602 * 240.00037 * 2 1 3 13 13 C 1.47839 * 111.00190 * 180.84407 * 12 2 1 14 14 C 1.54911 * 104.79637 * 213.63518 * 13 12 2 15 15 C 1.55135 * 101.65473 * 37.06702 * 14 13 12 16 16 C 1.53000 * 110.70704 * 205.96533 * 15 14 13 17 17 C 1.47199 * 110.85409 * 82.79657 * 15 14 13 18 18 N 4.44028 * 116.28365 * 315.07171 * 2 1 3 19 19 C 1.47443 * 111.00400 * 59.99640 * 12 2 1 20 20 H 1.09000 * 109.47039 * 173.92922 * 1 2 3 21 21 H 1.08991 * 109.47102 * 293.93318 * 1 2 3 22 22 H 1.09002 * 109.46619 * 53.93307 * 1 2 3 23 23 H 0.97008 * 119.99896 * 355.07877 * 7 6 4 24 24 H 1.09002 * 110.37652 * 332.46097 * 13 12 2 25 25 H 1.09001 * 110.37851 * 94.80580 * 13 12 2 26 26 H 1.09005 * 110.98600 * 278.97437 * 14 13 12 27 27 H 1.09001 * 111.02253 * 155.17538 * 14 13 12 28 28 H 1.09002 * 109.46674 * 173.59788 * 16 15 14 29 29 H 1.08988 * 109.47050 * 293.59700 * 16 15 14 30 30 H 1.09002 * 109.47172 * 53.60095 * 16 15 14 31 31 H 1.09000 * 109.89359 * 242.67018 * 19 12 2 32 32 H 1.09003 * 109.88522 * 3.69320 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.2829 -1.7598 1.1838 6 6 2.1720 -0.0204 2.4161 7 7 1.7545 1.2234 2.5063 8 14 2.9544 -0.8524 3.8943 9 1 2.9874 0.0963 5.0363 10 1 2.1586 -2.0493 4.2675 11 1 4.3397 -1.2654 3.5541 12 7 2.0198 -0.6924 -1.1993 13 6 3.4975 -0.7297 -1.2233 14 6 3.8713 -0.6369 -2.7238 15 6 2.7949 0.3461 -3.2546 16 6 2.5412 0.1167 -4.7459 17 6 3.1908 1.7416 -3.0045 18 7 3.4962 2.8187 -2.8116 19 6 1.5471 -0.0240 -2.4256 20 1 -0.3633 -1.0219 -0.1087 21 1 -0.3633 0.4169 0.9392 22 1 -0.3632 0.6050 -0.8307 23 1 1.4141 1.6789 1.7203 24 1 3.9075 0.1196 -0.6769 25 1 3.8605 -1.6659 -0.7991 26 1 3.7851 -1.6094 -3.2085 27 1 4.8727 -0.2261 -2.8526 28 1 1.7055 0.7360 -5.0717 29 1 3.4336 0.3839 -5.3116 30 1 2.3035 -0.9333 -4.9167 31 1 0.9107 -0.7011 -2.9954 32 1 0.9909 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606253546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:13 Heat of formation + Delta-G solvation = -0.666582 kcal Electronic energy + Delta-G solvation = -13984.178843 eV Core-core repulsion = 11750.459969 eV Total energy + Delta-G solvation = -2233.718874 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75878 -37.61918 -36.08576 -33.75481 -31.62643 -29.42562 -27.46539 -26.15170 -23.86577 -22.77898 -21.51392 -19.09133 -17.97916 -16.93129 -15.98193 -15.61942 -15.38508 -15.26794 -14.74002 -14.33098 -14.12216 -13.83325 -13.66353 -13.24258 -13.05194 -12.79274 -12.74012 -12.60888 -12.33588 -12.05387 -11.96848 -11.91302 -11.79514 -11.57891 -10.73660 -10.39739 -9.09917 -8.61620 -6.33381 1.51574 1.56032 1.59648 1.62932 1.78208 2.55574 2.76804 3.15225 3.34887 3.53245 3.71297 3.93033 4.40975 4.46045 4.50766 4.58110 4.73931 4.80052 4.85262 4.90460 5.02316 5.04528 5.09900 5.16828 5.21028 5.34792 5.45899 5.93364 5.98811 6.34817 6.42823 6.47981 6.68675 7.48349 8.75095 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.040627 B = 0.009396 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.024014 B = 2979.420493 C = 2994.318439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.193 3.807 3 H -0.045 1.045 4 C -0.583 4.583 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.943 5.943 8 Si 1.113 2.887 9 H -0.290 1.290 10 H -0.266 1.266 11 H -0.270 1.270 12 N -0.519 5.519 13 C 0.055 3.945 14 C -0.099 4.099 15 C 0.010 3.990 16 C -0.122 4.122 17 C 0.235 3.765 18 N -0.494 5.494 19 C 0.049 3.951 20 H 0.058 0.942 21 H 0.023 0.977 22 H 0.039 0.961 23 H 0.252 0.748 24 H -0.001 1.001 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -7.427 -13.767 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H -0.028 1.028 4 C -0.622 4.622 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.581 5.581 8 Si 0.935 3.065 9 H -0.216 1.216 10 H -0.191 1.191 11 H -0.196 1.196 12 N -0.243 5.243 13 C -0.073 4.073 14 C -0.138 4.138 15 C 0.005 3.995 16 C -0.180 4.180 17 C -0.082 4.082 18 N -0.170 5.170 19 C -0.080 4.080 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.017 0.983 25 H 0.098 0.902 26 H 0.151 0.849 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.142 0.858 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.477 -6.076 -11.857 13.551 hybrid contribution -0.329 1.060 -1.042 1.523 sum 2.148 -5.016 -12.899 14.006 Atomic orbital electron populations 1.21740 0.97089 1.00562 0.98375 1.19452 0.92639 0.89952 0.89475 1.02777 1.22132 1.46412 0.97712 0.95937 0.92610 1.27273 0.95354 0.96119 1.04720 1.70937 1.41774 1.13625 1.31753 0.82983 0.76484 0.74764 0.72244 1.21637 1.19104 1.19562 1.63745 1.08662 1.50581 1.01343 1.22822 0.88067 0.99978 0.96454 1.22963 0.97146 1.00205 0.93460 1.19843 0.97624 0.81082 1.00925 1.21795 1.03308 1.05351 0.87560 1.29819 0.91806 0.95231 0.91295 1.81171 1.10743 1.14579 1.10504 1.23221 0.95338 0.98061 0.91346 0.92256 0.95804 0.94183 0.93795 0.98291 0.90162 0.84891 0.89688 0.91257 0.90539 0.87154 0.85837 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.82 71.98 0.63 -4.90 16 2 C 0.19 9.72 1.27 44.17 0.06 9.77 16 3 H -0.05 -2.67 6.91 -2.38 -0.02 -2.69 16 4 C -0.58 -32.42 7.64 25.60 0.20 -32.22 16 5 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 6 C -0.04 -2.16 5.45 84.65 0.46 -1.70 16 7 N -0.94 -59.33 13.63 21.45 0.29 -59.04 16 8 Si 1.11 50.82 29.91 68.60 2.05 52.87 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 N -0.52 -20.61 5.02 -864.74 -4.34 -24.95 16 13 C 0.05 2.01 5.64 86.78 0.49 2.50 16 14 C -0.10 -2.36 6.00 31.98 0.19 -2.17 16 15 C 0.01 0.25 0.86 -52.81 -0.05 0.20 16 16 C -0.12 -1.78 8.44 71.98 0.61 -1.17 16 17 C 0.24 7.97 13.65 89.44 1.22 9.19 16 18 N -0.49 -19.88 18.54 20.01 0.37 -19.51 16 19 C 0.05 1.51 5.36 86.65 0.46 1.98 16 20 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 21 H 0.02 1.20 7.88 -2.39 -0.02 1.18 16 22 H 0.04 1.62 6.69 -2.39 -0.02 1.60 16 23 H 0.25 16.26 6.42 -92.70 -0.60 15.67 16 24 H 0.00 -0.07 7.77 -2.39 -0.02 -0.08 16 25 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.13 2.19 8.02 -2.38 -0.02 2.17 16 27 H 0.08 1.87 8.03 -2.39 -0.02 1.86 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 1.03 8.11 -2.39 -0.02 1.01 16 31 H 0.12 2.91 7.82 -2.39 -0.02 2.89 16 32 H 0.03 1.15 6.03 -2.39 -0.01 1.14 16 Total: -1.00 -71.95 265.60 3.91 -68.04 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 1.26 Total: 1.10 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.28 Total: -18.50 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.68 Total: -103.51 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -71.95 3.91 -68.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.373 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds