Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47158 * 300.00052 * 3 2 1 6 6 H 1.48501 * 109.46681 * 60.00312 * 3 2 1 7 7 C 1.39004 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99745 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99969 * 180.02562 * 9 7 2 11 11 O 1.21624 * 120.00064 * 359.73024 * 10 9 7 12 12 C 1.47426 * 119.99872 * 180.02562 * 10 9 7 13 13 C 1.41883 * 120.26371 * 179.72886 * 12 10 9 14 14 C 1.35950 * 118.86240 * 179.97438 * 13 12 10 15 15 C 1.40859 * 119.34747 * 359.97438 * 14 13 12 16 16 O 1.21861 * 119.74426 * 180.02562 * 15 14 13 17 17 O 1.34369 * 120.49931 * 359.97438 * 15 14 13 18 18 C 1.33729 * 121.21169 * 359.73684 * 17 15 14 19 19 H 0.96995 * 119.99976 * 0.02562 * 1 2 3 20 20 H 0.96998 * 119.99506 * 0.02562 * 9 7 2 21 21 H 1.07999 * 120.57106 * 359.97438 * 13 12 10 22 22 H 1.08002 * 120.32661 * 180.02562 * 14 13 12 23 23 H 1.08000 * 119.69591 * 180.28718 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3963 1.2126 7 6 2.0090 -1.2038 -0.0005 8 1 3.0890 -1.2038 -0.0010 9 7 1.3243 -2.3897 -0.0005 10 6 1.9982 -3.5569 -0.0005 11 8 3.2144 -3.5569 -0.0055 12 6 1.2610 -4.8336 -0.0011 13 6 1.9648 -6.0656 -0.0069 14 6 1.2564 -7.2260 -0.0068 15 6 -0.1513 -7.1755 -0.0003 16 8 -0.7934 -8.2112 0.0003 17 8 -0.7913 -5.9940 0.0061 18 6 -0.1157 -4.8400 0.0119 19 1 -0.4850 0.8400 -0.0004 20 1 0.3543 -2.3896 -0.0005 21 1 3.0446 -6.0814 -0.0114 22 1 1.7679 -8.1772 -0.0107 23 1 -0.6550 -3.9043 0.0217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606253971.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = -99.392974 kcal Electronic energy + Delta-G solvation = -12918.263036 eV Core-core repulsion = 10310.878214 eV Total energy + Delta-G solvation = -2607.384822 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.05811 -40.27767 -38.89790 -36.36340 -35.78064 -33.58376 -31.56140 -27.33183 -26.17479 -25.22210 -22.20408 -20.43434 -19.36393 -18.83923 -18.03641 -17.91367 -16.95258 -16.46129 -15.75839 -15.57677 -15.52978 -15.04713 -14.14434 -14.08350 -13.60185 -13.40749 -12.98799 -12.46425 -12.10249 -12.09261 -11.59270 -11.41129 -10.69529 -10.15779 -9.62161 -8.57712 -6.02292 -0.63288 0.10822 1.25677 1.39996 1.45947 1.58820 1.86364 2.25382 2.47574 2.87725 3.14272 3.21967 3.56931 3.65095 4.17364 4.34729 4.58642 4.95502 5.03471 5.36197 5.88793 5.92243 6.30002 6.43807 7.00371 7.36472 7.91434 8.58970 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.068982 B = 0.007417 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.803633 B = 3774.344276 C = 4170.297980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.088 0.912 9 N -0.550 5.550 10 C 0.483 3.517 11 O -0.628 6.628 12 C -0.241 4.241 13 C 0.042 3.958 14 C -0.262 4.262 15 C 0.489 3.511 16 O -0.516 6.516 17 O -0.255 6.255 18 C 0.156 3.844 19 H 0.283 0.717 20 H 0.398 0.602 21 H 0.160 0.840 22 H 0.187 0.813 23 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -5.303 0.027 5.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.208 4.208 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.106 0.894 9 N -0.185 5.185 10 C 0.273 3.727 11 O -0.517 6.517 12 C -0.246 4.246 13 C 0.023 3.977 14 C -0.281 4.281 15 C 0.344 3.656 16 O -0.410 6.410 17 O -0.162 6.162 18 C 0.088 3.912 19 H 0.093 0.907 20 H 0.234 0.766 21 H 0.178 0.822 22 H 0.205 0.795 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.820 -5.624 0.025 5.684 hybrid contribution 0.029 0.868 0.001 0.869 sum -0.790 -4.756 0.026 4.821 Atomic orbital electron populations 1.69613 1.06841 1.30007 1.48098 1.26098 0.96577 1.02554 0.95532 0.84816 0.78189 0.76699 0.78376 1.19555 1.19582 1.19586 1.19809 0.93215 0.83404 1.49768 0.89424 1.41863 1.09472 1.04659 1.62545 1.17630 0.87154 0.83337 0.84618 1.90607 1.14787 1.87399 1.58881 1.20343 0.93650 0.95817 1.14755 1.21737 1.02599 0.89224 0.84158 1.22502 0.91318 1.01625 1.12612 1.19684 0.89443 0.80611 0.75865 1.90966 1.70936 1.28027 1.51034 1.83432 1.44627 1.15206 1.72936 1.24914 0.91159 0.87137 0.88003 0.90690 0.76588 0.82219 0.79547 0.75945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.05 13.05 21.67 0.28 -43.76 14 2 C -0.01 -0.27 5.50 84.94 0.47 0.20 14 3 Si 1.00 39.21 29.55 68.60 2.03 41.23 14 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 14 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 14 6 H -0.27 -10.26 7.11 99.48 0.71 -9.56 14 7 C -0.33 -17.20 9.68 84.08 0.81 -16.39 14 8 H 0.09 4.86 7.15 -2.91 -0.02 4.83 14 9 N -0.55 -25.31 5.23 -309.98 -1.62 -26.93 14 10 C 0.48 21.20 7.71 86.66 0.67 21.87 14 11 O -0.63 -32.29 15.98 -4.11 -0.07 -32.36 14 12 C -0.24 -7.93 5.87 -20.09 -0.12 -8.05 14 13 C 0.04 1.19 9.65 22.64 0.22 1.41 14 14 C -0.26 -6.66 9.98 22.38 0.22 -6.43 14 15 C 0.49 14.91 7.93 68.46 0.54 15.45 14 16 O -0.52 -18.62 17.93 18.71 0.34 -18.28 14 17 O -0.26 -7.36 9.85 25.84 0.25 -7.11 14 18 C 0.16 4.31 10.95 67.69 0.74 5.05 14 19 H 0.28 12.86 8.31 -92.71 -0.77 12.09 14 20 H 0.40 16.54 5.91 -92.71 -0.55 15.99 14 21 H 0.16 4.34 7.73 -2.91 -0.02 4.32 14 22 H 0.19 3.70 8.06 -2.91 -0.02 3.68 14 23 H 0.22 5.21 6.34 -2.91 -0.02 5.19 14 Total: -1.00 -62.73 223.68 5.49 -57.24 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.72 Total: 16.86 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 3.56 Total: 13.11 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.34 Total: -70.69 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: 0.52 Total: -57.75 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -62.73 5.49 -57.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606253971.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.153 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds