Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47069 * 65.25703 * 3 2 1 5 5 C 1.36939 * 119.99808 * 263.91065 * 4 3 2 6 6 H 1.07999 * 120.00077 * 199.33553 * 5 4 3 7 7 C 1.38815 * 120.00071 * 19.33845 * 5 4 3 8 8 N 1.31623 * 119.99714 * 22.33396 * 7 5 4 9 9 Si 1.86797 * 120.00125 * 202.33342 * 7 5 4 10 10 H 1.48495 * 109.47179 * 89.99907 * 9 7 5 11 11 H 1.48502 * 109.46813 * 210.00238 * 9 7 5 12 12 H 1.48496 * 109.47104 * 329.99521 * 9 7 5 13 13 C 1.46498 * 120.00495 * 83.91611 * 4 3 2 14 14 C 1.53125 * 109.52439 * 240.00046 * 13 4 3 15 15 C 1.53030 * 109.28180 * 182.43805 * 14 13 4 16 16 N 1.46848 * 109.52230 * 59.17537 * 15 14 13 17 17 C 1.46842 * 111.19847 * 298.25746 * 16 15 14 18 18 C 1.53034 * 109.52195 * 61.74417 * 17 16 15 19 19 H 4.40632 * 5.51472 * 180.02562 * 4 1 2 20 20 H 1.08999 * 109.47168 * 305.25328 * 3 2 1 21 21 H 1.09002 * 109.47112 * 185.25152 * 3 2 1 22 22 H 0.96996 * 119.99522 * 180.02562 * 8 7 5 23 23 H 1.09000 * 109.57179 * 0.15445 * 13 4 3 24 24 H 1.09000 * 109.50331 * 62.49091 * 14 13 4 25 25 H 1.09007 * 109.49735 * 302.37883 * 14 13 4 26 26 H 1.08998 * 109.46071 * 299.16183 * 15 14 13 27 27 H 1.08993 * 109.46393 * 179.19309 * 15 14 13 28 28 H 1.00901 * 110.99976 * 62.35924 * 16 15 14 29 29 H 1.09005 * 109.46351 * 181.75785 * 17 16 15 30 30 H 1.08997 * 109.46872 * 301.72690 * 17 16 15 31 31 H 1.09005 * 109.50716 * 180.87416 * 18 17 16 32 32 H 1.09006 * 109.50605 * 60.76095 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5772 -1.2544 5 6 3.4820 -1.9007 -1.3090 6 1 4.1198 -2.2592 -2.1033 7 6 3.0142 -2.7815 -0.3434 8 7 1.9295 -2.4901 0.3430 9 14 3.9241 -4.3801 -0.0181 10 1 4.9490 -4.1611 1.0340 11 1 2.9605 -5.4142 0.4371 12 1 4.5860 -4.8358 -1.2668 13 6 3.2516 0.2607 -2.4504 14 6 2.3655 -0.3079 -3.5623 15 6 2.5384 0.5357 -4.8273 16 7 3.9471 0.5163 -5.2413 17 6 4.8121 1.1010 -4.2088 18 6 4.7071 0.2743 -2.9253 19 1 -1.0499 0.0001 -0.0003 20 1 3.0096 -0.5923 0.8392 21 1 3.0089 1.0242 0.0941 22 1 1.6029 -3.1054 1.0179 23 1 2.9352 1.2772 -2.2165 24 1 1.3226 -0.2806 -3.2463 25 1 2.6569 -1.3377 -3.7689 26 1 2.2338 1.5623 -4.6237 27 1 1.9197 0.1250 -5.6251 28 1 4.2430 -0.4201 -5.4732 29 1 5.8449 1.1009 -4.5574 30 1 4.4970 2.1250 -4.0081 31 1 5.3374 0.7175 -2.1543 32 1 5.0353 -0.7464 -3.1220 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642873294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = 57.102183 kcal Electronic energy + Delta-G solvation = -14107.527582 eV Core-core repulsion = 11876.313750 eV Total energy + Delta-G solvation = -2231.213832 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92389 -37.16652 -33.50778 -33.35057 -31.62302 -30.58564 -27.89976 -25.51472 -23.61047 -22.91171 -21.21154 -19.13240 -18.14439 -17.27086 -16.39121 -15.77537 -15.47202 -15.33468 -14.99949 -14.93849 -13.89485 -13.81528 -13.34755 -13.03918 -12.90195 -12.76085 -12.53433 -12.33644 -12.06121 -11.89920 -11.45773 -11.31104 -10.76493 -10.66442 -10.33666 -9.27554 -8.86988 -7.82307 -5.24156 1.44403 1.47274 1.53838 2.30701 2.50596 2.58753 3.28373 3.45589 3.72266 4.04202 4.07322 4.23794 4.35692 4.48443 4.58542 4.64658 4.79439 4.91291 4.96272 5.06211 5.17871 5.22190 5.26950 5.49762 5.53284 5.65860 5.68344 6.15204 6.31458 6.51289 7.11737 7.34432 7.85909 8.29185 9.18988 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.012527 C = 0.009952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.282514 B = 2234.648898 C = 2812.708519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.130 4.130 3 C 0.269 3.731 4 N -0.595 5.595 5 C -0.252 4.252 6 H 0.071 0.929 7 C -0.049 4.049 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.287 1.287 11 H -0.303 1.303 12 H -0.273 1.273 13 C 0.171 3.829 14 C -0.148 4.148 15 C 0.069 3.931 16 N -0.683 5.683 17 C 0.066 3.934 18 C -0.151 4.151 19 H 0.220 0.780 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.244 0.756 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.341 0.659 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 6.640 -6.652 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.133 4.133 3 C 0.143 3.857 4 N -0.314 5.314 5 C -0.381 4.381 6 H 0.088 0.912 7 C -0.245 4.245 8 N -0.559 5.559 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.230 1.230 12 H -0.198 1.198 13 C 0.065 3.935 14 C -0.189 4.189 15 C -0.062 4.062 16 N -0.311 5.311 17 C -0.064 4.064 18 C -0.192 4.192 19 H 0.236 0.764 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.158 0.842 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.424 7.138 -6.918 10.514 hybrid contribution -0.305 -2.133 1.373 2.555 sum 3.120 5.005 -5.545 8.095 Atomic orbital electron populations 1.24965 0.96356 1.06949 1.03324 1.24719 0.96178 0.94820 0.97624 1.17719 0.82873 0.95315 0.89793 1.44389 1.74602 1.06917 1.05537 1.19233 1.22848 0.85100 1.10966 0.91167 1.25544 0.96985 1.00460 1.01485 1.70290 1.20797 1.37729 1.27081 0.85458 0.77897 0.80144 0.78083 1.21410 1.23024 1.19803 1.20563 0.94047 0.92961 0.85924 1.22530 0.99200 0.99631 0.97588 1.21958 0.90057 0.99693 0.94474 1.60800 1.02482 1.26920 1.40920 1.22026 0.97876 0.98027 0.88510 1.22559 0.97285 1.00298 0.99047 0.76361 0.91742 0.91993 0.94633 0.92594 0.94919 0.94104 0.90734 0.90290 0.84178 0.89345 0.90575 0.92048 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.58 19.25 74.32 1.43 -12.15 16 2 C -0.13 -6.42 11.50 31.12 0.36 -6.07 16 3 C 0.27 12.83 5.35 84.57 0.45 13.28 16 4 N -0.59 -28.45 2.43 -688.08 -1.67 -30.13 16 5 C -0.25 -13.23 8.32 84.03 0.70 -12.54 16 6 H 0.07 3.66 6.83 -2.91 -0.02 3.64 16 7 C -0.05 -2.66 4.82 84.86 0.41 -2.25 16 8 N -0.91 -52.88 9.61 21.65 0.21 -52.67 16 9 Si 0.95 44.74 29.61 68.60 2.03 46.77 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.17 6.68 2.69 45.07 0.12 6.80 16 14 C -0.15 -5.61 5.37 30.65 0.16 -5.45 16 15 C 0.07 1.97 6.55 86.32 0.57 2.54 16 16 N -0.68 -18.11 6.87 -514.04 -3.53 -21.64 16 17 C 0.07 1.69 6.55 86.33 0.57 2.26 16 18 C -0.15 -4.98 5.36 30.64 0.16 -4.82 16 19 H 0.22 8.17 7.80 -4.42 -0.03 8.14 16 20 H 0.06 3.41 6.59 -2.39 -0.02 3.39 16 21 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 22 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 23 H 0.06 2.11 7.88 -2.39 -0.02 2.09 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.72 7.59 -2.38 -0.02 1.70 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.34 8.86 8.86 -89.69 -0.79 8.07 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 1.70 6.91 -2.38 -0.02 1.69 16 Total: -1.00 -60.66 263.27 2.26 -58.40 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.30 Total: 17.65 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.93 Total: -18.39 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.00 Total: -104.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -60.66 2.26 -58.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642873294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.499 kcal (2) G-P(sol) polarization free energy of solvation -60.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds