Wall clock time and date at job start Mon Mar 30 2020 02:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 15 15 C 1.47207 * 115.54860 * 158.28450 * 14 2 1 16 16 N 3.50198 * 148.01125 * 264.03006 * 2 1 3 17 17 C 1.53000 * 117.50292 * 12.57772 * 14 2 1 18 18 C 1.53001 * 117.50380 * 303.95091 * 14 2 1 19 19 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 20 20 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 22 22 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 23 23 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 25 25 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 26 26 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 28 28 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 29 29 H 1.08998 * 117.49627 * 359.97438 * 17 14 2 30 30 H 1.09000 * 117.49631 * 145.01735 * 17 14 2 31 31 H 1.08995 * 117.50342 * 214.98395 * 18 14 2 32 32 H 1.09006 * 117.49559 * 0.02562 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 6 1.8213 4.1616 2.6166 7 1 1.2590 3.6257 3.3669 8 6 2.2117 5.4637 2.8468 9 7 2.8969 6.1161 1.9333 10 14 1.7674 6.3013 4.4563 11 1 2.3592 5.5438 5.5883 12 1 2.3003 7.6875 4.4565 13 1 0.2903 6.3382 4.6038 14 6 1.9953 -0.7660 -1.1376 15 6 3.3748 -0.4426 -1.5370 16 7 4.4392 -0.1930 -1.8451 17 6 1.0119 -1.1545 -2.2434 18 6 1.5409 -2.2199 -1.2812 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5611 1.9273 -0.8309 23 1 3.0797 1.3443 -0.1084 24 1 2.0658 1.5016 2.1492 25 1 0.5472 2.0845 1.4264 26 1 3.2636 3.4594 1.2094 27 1 1.7446 4.0416 0.4870 28 1 3.1719 7.0321 2.0954 29 1 -0.0258 -0.8419 -2.1266 30 1 1.3862 -1.1703 -3.2670 31 1 2.2631 -2.9368 -1.6717 32 1 0.8510 -2.6079 -0.5317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693962471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:05 Heat of formation + Delta-G solvation = 54.653882 kcal Electronic energy + Delta-G solvation = -13162.238586 eV Core-core repulsion = 10930.918588 eV Total energy + Delta-G solvation = -2231.319998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.65555 -36.02151 -35.13266 -33.10396 -30.86215 -27.55139 -26.01411 -23.11549 -22.82628 -21.76691 -19.97384 -17.72070 -16.29886 -16.12379 -14.79685 -14.47758 -14.37360 -13.84091 -13.65220 -13.31528 -12.97939 -12.52307 -12.27429 -11.89964 -11.75358 -11.55776 -11.29125 -10.99992 -10.87927 -10.72486 -10.54776 -10.45692 -9.65068 -9.35166 -9.07345 -8.33108 -8.18563 -5.97994 -4.00660 2.46519 2.63014 3.34841 3.39139 3.41472 3.51909 3.71683 3.97179 4.47837 4.50125 4.72900 5.09144 5.29681 5.36037 5.37815 5.49234 5.56920 5.68464 5.80582 5.85736 5.99705 6.21939 6.59629 6.65355 6.95997 7.13551 7.17888 7.51408 7.68574 7.82579 8.01567 8.43894 9.06239 9.63303 11.13457 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.052834 B = 0.006079 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.837348 B = 4604.744941 C = 4948.634411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.493 5.493 3 C 0.049 3.951 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.124 3.876 15 C 0.247 3.753 16 N -0.417 5.417 17 C -0.189 4.189 18 C -0.138 4.138 19 H 0.035 0.965 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.261 0.739 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -14.861 -6.587 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.215 5.215 3 C -0.078 4.078 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.030 3.970 15 C -0.071 4.071 16 N -0.092 5.092 17 C -0.230 4.230 18 C -0.178 4.178 19 H 0.054 0.946 20 H 0.088 0.912 21 H 0.105 0.895 22 H 0.056 0.944 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.798 -14.505 -6.631 16.655 hybrid contribution -0.786 0.940 0.279 1.256 sum -5.583 -13.565 -6.352 15.986 Atomic orbital electron populations 1.22641 0.86227 1.02011 1.02287 1.62239 1.08489 1.15497 1.35295 1.22490 0.99719 0.85460 1.00091 1.21665 1.00280 0.98307 0.93853 1.19074 0.96312 0.89122 0.97120 1.21190 1.35006 0.97618 1.01990 0.92637 1.25034 0.95191 0.97514 0.96752 1.69957 1.38172 1.11366 1.34055 0.86646 0.78728 0.78496 0.84057 1.20211 1.21317 1.20234 1.18368 0.84562 0.99223 0.94864 1.27364 0.93124 0.93330 0.93314 1.81262 1.11395 1.07813 1.08734 1.23751 1.00181 1.03146 0.95915 1.23261 1.03031 0.89782 1.01680 0.94627 0.91165 0.89539 0.94443 0.91286 0.92348 0.93008 0.96651 0.96741 0.92949 0.86410 0.88010 0.87719 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 7.99 60.07 0.48 0.66 16 2 N -0.49 -6.91 4.97 -230.43 -1.15 -8.06 16 3 C 0.05 0.87 4.57 -3.83 -0.02 0.85 16 4 C -0.10 -2.12 5.08 -26.73 -0.14 -2.26 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.12 1.50 2.74 -134.39 -0.37 1.13 16 15 C 0.25 3.69 13.08 -20.76 -0.27 3.42 16 16 N -0.42 -7.18 18.54 42.15 0.78 -6.40 16 17 C -0.19 -1.62 9.25 -26.73 -0.25 -1.87 16 18 C -0.14 -1.15 9.63 -26.73 -0.26 -1.41 16 19 H 0.04 0.37 7.00 -51.93 -0.36 0.01 16 20 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 21 H 0.09 1.05 6.47 -51.93 -0.34 0.71 16 22 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 23 H 0.07 1.33 6.58 -51.93 -0.34 0.99 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.05 1.01 6.55 -51.93 -0.34 0.67 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.12 0.87 5.95 -51.93 -0.31 0.56 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 0.81 7.25 -51.93 -0.38 0.43 16 LS Contribution 270.78 15.07 4.08 4.08 Total: -1.00 -31.86 270.78 -6.42 -38.28 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -4.48 Total: -5.34 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.37 Total: -12.71 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.37 Total: -41.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.86 -6.42 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693962471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.931 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds