Wall clock time and date at job start Mon Mar 30 2020 02:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 15 15 C 1.47207 * 115.54860 * 158.28450 * 14 2 1 16 16 N 3.50198 * 148.01125 * 264.03006 * 2 1 3 17 17 C 1.53000 * 117.50292 * 12.57772 * 14 2 1 18 18 C 1.53001 * 117.50380 * 303.95091 * 14 2 1 19 19 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 20 20 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 22 22 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 23 23 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 24 24 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 25 25 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 26 26 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 28 28 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 29 29 H 1.08998 * 117.49627 * 359.97438 * 17 14 2 30 30 H 1.09000 * 117.49631 * 145.01735 * 17 14 2 31 31 H 1.08995 * 117.50342 * 214.98395 * 18 14 2 32 32 H 1.09006 * 117.49559 * 0.02562 * 18 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 6 1.8213 4.1616 2.6166 7 1 1.2590 3.6257 3.3669 8 6 2.2117 5.4637 2.8468 9 7 2.8969 6.1161 1.9333 10 14 1.7674 6.3013 4.4563 11 1 2.3592 5.5438 5.5883 12 1 2.3003 7.6875 4.4565 13 1 0.2903 6.3382 4.6038 14 6 1.9953 -0.7660 -1.1376 15 6 3.3748 -0.4426 -1.5370 16 7 4.4392 -0.1930 -1.8451 17 6 1.0119 -1.1545 -2.2434 18 6 1.5409 -2.2199 -1.2812 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.5611 1.9273 -0.8309 23 1 3.0797 1.3443 -0.1084 24 1 2.0658 1.5016 2.1492 25 1 0.5472 2.0845 1.4264 26 1 3.2636 3.4594 1.2094 27 1 1.7446 4.0416 0.4870 28 1 3.1719 7.0321 2.0954 29 1 -0.0258 -0.8419 -2.1266 30 1 1.3862 -1.1703 -3.2670 31 1 2.2631 -2.9368 -1.6717 32 1 0.8510 -2.6079 -0.5317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693962471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:05 Heat of formation + Delta-G solvation = 33.163637 kcal Electronic energy + Delta-G solvation = -13163.170473 eV Core-core repulsion = 10930.918588 eV Total energy + Delta-G solvation = -2232.251885 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61140 -37.28170 -36.52767 -34.93718 -32.60195 -28.85181 -27.57419 -24.74718 -23.50455 -23.03376 -21.64550 -18.86667 -18.29483 -17.16735 -16.52540 -16.08345 -15.52934 -14.99779 -14.81581 -14.52042 -14.28940 -14.08837 -13.77169 -13.44835 -13.18675 -12.71184 -12.56721 -12.44230 -12.37146 -12.22190 -11.80272 -11.68429 -11.44810 -11.36025 -11.06245 -10.56149 -9.20195 -8.20860 -6.32887 1.40013 1.42552 1.44007 1.49789 1.51898 2.40475 2.56378 2.76051 3.07255 3.12367 3.62641 3.97398 4.05979 4.23567 4.41199 4.60827 4.64226 4.69756 4.80841 4.87111 4.97148 5.02791 5.14951 5.21857 5.26636 5.50026 5.69334 5.83134 5.88182 6.00776 6.23197 6.39831 6.84261 7.36914 8.91258 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.052834 B = 0.006079 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.837348 B = 4604.744941 C = 4948.634411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.498 5.498 3 C 0.063 3.937 4 C -0.087 4.087 5 C 0.024 3.976 6 C -0.542 4.542 7 H 0.065 0.935 8 C -0.004 4.004 9 N -0.937 5.937 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.262 1.262 14 C 0.081 3.919 15 C 0.263 3.737 16 N -0.474 5.474 17 C -0.167 4.167 18 C -0.110 4.110 19 H 0.044 0.956 20 H 0.107 0.893 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.067 0.933 26 H -0.020 1.020 27 H -0.009 1.009 28 H 0.263 0.737 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 -16.551 -6.010 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.221 5.221 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.014 4.014 6 C -0.580 4.580 7 H 0.083 0.917 8 C -0.201 4.201 9 N -0.578 5.578 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.186 1.186 14 C -0.012 4.012 15 C -0.054 4.054 16 N -0.150 5.150 17 C -0.208 4.208 18 C -0.149 4.149 19 H 0.063 0.937 20 H 0.125 0.875 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.086 0.914 26 H -0.002 1.002 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.072 -16.226 -6.062 18.710 hybrid contribution -0.100 1.422 0.047 1.426 sum -7.172 -14.805 -6.016 17.516 Atomic orbital electron populations 1.22795 0.84173 1.04403 1.02172 1.62179 1.10282 1.12638 1.37009 1.22096 0.98304 0.88048 0.98021 1.21384 1.00733 0.94826 0.95499 1.18986 0.94125 0.92562 0.95737 1.21662 1.35103 0.98287 1.02918 0.91684 1.26059 0.94863 0.98376 1.00823 1.70111 1.39364 1.11811 1.36492 0.85443 0.79140 0.77124 0.79003 1.19194 1.20996 1.18647 1.18726 0.83700 1.02108 0.96707 1.28063 0.93647 0.91823 0.91895 1.81254 1.13272 1.09675 1.10810 1.23912 0.99850 1.01558 0.95435 1.23481 1.02515 0.87606 1.01253 0.93720 0.87477 0.90697 0.94873 0.93882 0.92834 0.91404 1.00151 0.99054 0.92805 0.84528 0.87243 0.86509 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 7.99 127.69 1.02 1.23 16 2 N -0.50 -13.14 4.97 -882.96 -4.39 -17.53 16 3 C 0.06 2.26 4.57 86.30 0.39 2.66 16 4 C -0.09 -3.61 5.08 30.59 0.16 -3.46 16 5 C 0.02 1.29 4.97 29.85 0.15 1.44 16 6 C -0.54 -31.46 9.11 25.60 0.23 -31.22 16 7 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 8 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 9 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 10 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 14 C 0.08 1.79 2.74 1.72 0.00 1.80 16 15 C 0.26 7.86 13.08 89.44 1.17 9.03 16 16 N -0.47 -16.90 18.54 20.01 0.37 -16.52 16 17 C -0.17 -2.22 9.25 30.60 0.28 -1.94 16 18 C -0.11 -1.36 9.63 30.60 0.29 -1.07 16 19 H 0.04 0.78 7.00 -2.39 -0.02 0.76 16 20 H 0.11 1.26 6.56 -2.39 -0.02 1.24 16 21 H 0.07 1.62 6.47 -2.39 -0.02 1.61 16 22 H 0.03 1.18 8.12 -2.39 -0.02 1.17 16 23 H 0.04 1.74 6.58 -2.39 -0.02 1.73 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.07 2.60 6.55 -2.39 -0.02 2.58 16 26 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.14 1.35 5.95 -2.39 -0.01 1.34 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.14 1.17 7.25 -2.38 -0.02 1.15 16 Total: -1.00 -71.83 270.78 3.56 -68.27 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.10 Total: -1.23 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.17 Total: -21.30 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.74 Total: -92.57 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.83 3.56 -68.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693962471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.434 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds