Wall clock time and date at job start Mon Mar 30 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 14 14 C 1.46896 * 111.00084 * 306.05107 * 13 2 1 15 15 C 1.46904 * 110.99915 * 70.00061 * 13 2 1 16 16 C 1.47200 * 115.54995 * 34.41897 * 15 13 2 17 17 N 3.43937 * 96.15231 * 321.73226 * 2 1 3 18 18 C 1.53006 * 117.49767 * 248.74956 * 15 13 2 19 19 C 1.52996 * 117.50079 * 180.09009 * 15 13 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 24 24 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 25 25 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47503 * 59.99333 * 14 13 2 27 27 H 1.09007 * 109.47634 * 179.97438 * 14 13 2 28 28 H 1.09003 * 109.46925 * 299.99540 * 14 13 2 29 29 H 1.08993 * 117.49729 * 359.97438 * 18 15 13 30 30 H 1.08996 * 117.49542 * 145.01987 * 18 15 13 31 31 H 1.09000 * 117.50424 * 214.97828 * 19 15 13 32 32 H 1.09001 * 117.49913 * 359.97323 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1993 14 6 1.4343 -2.0354 -1.3078 15 6 1.7530 0.0972 -2.4090 16 6 1.8352 1.5577 -2.2447 17 7 1.8986 2.6848 -2.1179 18 6 0.7141 -0.4457 -3.3923 19 6 2.2021 -0.4893 -3.7488 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7714 1.2056 25 1 6.0256 -1.5084 3.1481 26 1 0.3491 -1.9549 -1.3693 27 1 1.8134 -2.5258 -2.2045 28 1 1.7059 -2.6221 -0.4301 29 1 0.2288 -1.3890 -3.1418 30 1 0.0918 0.2786 -3.9177 31 1 2.5580 0.2063 -4.5088 32 1 2.6958 -1.4609 -3.7328 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693987790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:06 Heat of formation + Delta-G solvation = 69.616510 kcal Electronic energy + Delta-G solvation = -13900.442121 eV Core-core repulsion = 11669.770951 eV Total energy + Delta-G solvation = -2230.671170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66389 -35.96403 -35.20045 -32.43397 -30.08979 -27.93926 -26.70783 -23.23636 -22.48153 -21.95943 -19.50059 -17.31446 -16.60982 -15.92248 -14.74442 -14.32894 -13.96702 -13.67921 -13.31285 -12.84694 -12.67361 -12.44012 -12.21354 -12.10013 -11.78769 -11.60405 -11.40991 -11.12544 -10.85127 -10.61564 -10.47341 -10.08714 -9.79035 -9.55634 -9.08883 -8.45119 -7.67918 -5.93069 -3.88292 2.70463 2.87102 3.33033 3.41596 3.43143 3.80792 3.97871 4.25203 4.51472 4.79072 4.99880 5.32263 5.40446 5.53463 5.55616 5.63821 5.66429 5.79938 5.84965 5.91013 6.05945 6.24343 6.39820 6.42839 6.65404 7.01613 7.19608 7.47771 7.58233 7.75993 7.87412 8.68126 9.19158 9.68827 11.20829 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.009561 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.028476 B = 2927.762927 C = 3016.579321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.089 3.911 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.496 4.496 6 H 0.078 0.922 7 C 0.063 3.937 8 N -0.905 5.905 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.462 5.462 14 C 0.017 3.983 15 C 0.129 3.871 16 C 0.255 3.745 17 N -0.427 5.427 18 C -0.195 4.195 19 C -0.140 4.140 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 -2.756 -10.009 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.019 4.019 3 H 0.094 0.906 4 C -0.042 4.042 5 C -0.534 4.534 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.184 5.184 14 C -0.131 4.131 15 C 0.034 3.966 16 C -0.063 4.063 17 N -0.103 5.103 18 C -0.236 4.236 19 C -0.179 4.179 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.151 -1.144 -9.610 14.025 hybrid contribution -1.163 -0.861 0.759 1.634 sum -11.314 -2.005 -8.851 14.504 Atomic orbital electron populations 1.22570 0.98867 1.01749 1.01341 1.21870 0.90572 0.98637 0.90789 0.90647 1.19689 0.98161 0.95071 0.91310 1.21038 0.89268 1.34222 1.08868 0.90353 1.25010 0.94671 0.96270 0.97729 1.69913 1.06426 1.45896 1.32272 0.86902 0.80426 0.80577 0.82057 1.20455 1.21573 1.19289 1.62279 1.56406 1.01331 0.98357 1.22627 0.96657 0.90191 1.03582 1.18416 1.05318 0.81933 0.90883 1.27389 0.92855 0.93036 0.93016 1.81200 1.09039 1.12329 1.07690 1.23755 0.93010 1.04064 1.02730 1.23253 0.96431 1.03496 0.94764 0.92223 0.93693 0.92247 0.96092 0.96547 0.92991 0.95013 0.91530 0.89449 0.86647 0.88445 0.87966 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 8.45 37.16 0.31 -2.62 16 2 C 0.09 1.74 1.90 -67.72 -0.13 1.61 16 3 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 4 C 0.00 -0.11 3.43 -27.89 -0.10 -0.21 16 5 C -0.50 -13.95 9.39 -34.44 -0.32 -14.27 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 9 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 N -0.46 -8.13 4.64 -222.48 -1.03 -9.17 16 14 C 0.02 0.24 7.45 60.06 0.45 0.69 16 15 C 0.13 1.90 1.90 -134.39 -0.26 1.65 16 16 C 0.25 4.37 12.74 -20.76 -0.26 4.11 16 17 N -0.43 -8.08 18.54 42.15 0.78 -7.30 16 18 C -0.19 -2.05 9.22 -26.69 -0.25 -2.30 16 19 C -0.14 -1.58 9.63 -26.70 -0.26 -1.84 16 20 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 21 H 0.04 0.65 7.20 -51.93 -0.37 0.27 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 24 H 0.02 0.37 5.76 -51.93 -0.30 0.07 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.03 0.39 5.07 -51.93 -0.26 0.13 16 27 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 28 H 0.09 1.43 6.37 -51.93 -0.33 1.10 16 29 H 0.12 1.07 5.95 -51.93 -0.31 0.76 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.12 1.22 7.25 -51.93 -0.38 0.84 16 LS Contribution 259.93 15.07 3.92 3.92 Total: -1.00 -31.74 259.93 -5.33 -37.06 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.19 Total: -2.57 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.91 Total: -11.45 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.52 Total: -43.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.74 -5.33 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693987790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.681 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds