Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 14 14 C 1.46896 * 111.00084 * 306.05107 * 13 2 1 15 15 C 1.46904 * 110.99915 * 70.00061 * 13 2 1 16 16 C 1.47200 * 115.54995 * 34.41897 * 15 13 2 17 17 N 3.43937 * 96.15231 * 321.73226 * 2 1 3 18 18 C 1.53006 * 117.49767 * 248.74956 * 15 13 2 19 19 C 1.52996 * 117.50079 * 180.09009 * 15 13 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 24 24 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 25 25 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.47503 * 59.99333 * 14 13 2 27 27 H 1.09007 * 109.47634 * 179.97438 * 14 13 2 28 28 H 1.09003 * 109.46925 * 299.99540 * 14 13 2 29 29 H 1.08993 * 117.49729 * 359.97438 * 18 15 13 30 30 H 1.08996 * 117.49542 * 145.01987 * 18 15 13 31 31 H 1.09000 * 117.50424 * 214.97828 * 19 15 13 32 32 H 1.09001 * 117.49913 * 359.97323 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1993 14 6 1.4343 -2.0354 -1.3078 15 6 1.7530 0.0972 -2.4090 16 6 1.8352 1.5577 -2.2447 17 7 1.8986 2.6848 -2.1179 18 6 0.7141 -0.4457 -3.3923 19 6 2.2021 -0.4893 -3.7488 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.6054 -0.2617 2.1370 24 1 1.7517 -1.7714 1.2056 25 1 6.0256 -1.5084 3.1481 26 1 0.3491 -1.9549 -1.3693 27 1 1.8134 -2.5258 -2.2045 28 1 1.7059 -2.6221 -0.4301 29 1 0.2288 -1.3890 -3.1418 30 1 0.0918 0.2786 -3.9177 31 1 2.5580 0.2063 -4.5088 32 1 2.6958 -1.4609 -3.7328 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693987790.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 47.154817 kcal Electronic energy + Delta-G solvation = -13901.416133 eV Core-core repulsion = 11669.770951 eV Total energy + Delta-G solvation = -2231.645182 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83256 -37.36599 -36.50938 -34.50165 -31.58070 -29.63185 -27.84424 -24.93896 -23.42802 -23.29645 -21.00580 -18.81483 -18.52617 -17.08345 -16.26604 -15.92441 -15.24475 -15.04132 -14.61511 -14.60208 -14.05342 -13.89594 -13.83167 -13.42248 -13.27641 -12.92300 -12.64619 -12.40746 -12.17053 -11.99347 -11.75128 -11.62703 -11.54774 -11.24141 -11.10135 -10.66474 -8.84987 -8.16968 -6.17313 1.38319 1.41432 1.49073 1.51850 1.56408 2.42895 2.67496 2.87254 3.12680 3.22568 3.74556 4.02943 4.10423 4.30392 4.40623 4.56035 4.60844 4.72733 4.86263 4.91105 4.99815 5.04497 5.13899 5.20129 5.26014 5.31528 5.51325 5.74126 6.19760 6.24793 6.45774 6.50470 6.90682 7.43493 9.00734 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.038189 B = 0.009561 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.028476 B = 2927.762927 C = 3016.579321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.038 0.962 4 C -0.002 4.002 5 C -0.495 4.495 6 H 0.028 0.972 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.947 3.053 10 H -0.263 1.263 11 H -0.292 1.292 12 H -0.247 1.247 13 N -0.494 5.494 14 C 0.015 3.985 15 C 0.088 3.912 16 C 0.267 3.733 17 N -0.475 5.475 18 C -0.156 4.156 19 C -0.128 4.128 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.018 0.982 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 -4.645 -10.875 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.056 0.944 4 C -0.039 4.039 5 C -0.533 4.533 6 H 0.046 0.954 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.771 3.229 10 H -0.187 1.187 11 H -0.219 1.219 12 H -0.171 1.171 13 N -0.216 5.216 14 C -0.131 4.131 15 C -0.006 4.006 16 C -0.049 4.049 17 N -0.152 5.152 18 C -0.197 4.197 19 C -0.167 4.167 20 H 0.100 0.900 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.941 -3.033 -10.504 16.941 hybrid contribution -0.223 -0.232 0.925 0.979 sum -13.164 -3.265 -9.579 16.604 Atomic orbital electron populations 1.22433 0.95574 1.03334 1.02043 1.21552 0.93061 0.96258 0.90576 0.94355 1.19620 0.94464 0.96517 0.93347 1.21261 0.92043 1.32746 1.07246 0.95385 1.25996 0.95511 0.97610 1.00732 1.70099 1.08628 1.47841 1.33565 0.85710 0.79539 0.79671 0.77988 1.18747 1.21884 1.17102 1.62140 1.58140 1.02717 0.98649 1.22702 0.98408 0.88296 1.03732 1.18680 1.10543 0.80192 0.91191 1.28025 0.91440 0.93763 0.91716 1.81185 1.11045 1.13918 1.09061 1.23898 0.92499 1.04566 0.98714 1.23439 0.97548 1.03686 0.92060 0.90028 0.92241 0.92384 0.96393 0.94800 0.93015 0.92191 0.89000 0.91790 0.84426 0.86785 0.86896 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.05 8.45 71.98 0.61 -4.44 16 2 C 0.09 3.62 1.90 44.92 0.09 3.70 16 3 H 0.04 1.73 6.58 -2.39 -0.02 1.71 16 4 C 0.00 -0.09 3.43 29.85 0.10 0.01 16 5 C -0.49 -28.69 9.39 25.60 0.24 -28.45 16 6 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 7 C 0.00 -0.21 5.47 84.66 0.46 0.25 16 8 N -0.96 -61.70 13.96 21.45 0.30 -61.40 16 9 Si 0.95 44.32 27.47 68.60 1.88 46.21 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 13 N -0.49 -16.78 4.64 -857.80 -3.98 -20.75 16 14 C 0.02 0.39 7.45 127.69 0.95 1.34 16 15 C 0.09 2.42 1.90 1.72 0.00 2.43 16 16 C 0.27 9.15 12.74 89.44 1.14 10.29 16 17 N -0.48 -18.44 18.54 20.01 0.37 -18.07 16 18 C -0.16 -2.60 9.22 30.62 0.28 -2.32 16 19 C -0.13 -2.49 9.63 30.62 0.29 -2.19 16 20 H 0.08 1.99 6.33 -2.39 -0.02 1.97 16 21 H 0.06 1.54 7.20 -2.39 -0.02 1.52 16 22 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 24 H 0.03 1.44 5.76 -2.39 -0.01 1.43 16 25 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.06 1.18 5.07 -2.39 -0.01 1.16 16 27 H 0.09 1.85 6.56 -2.38 -0.02 1.84 16 28 H 0.06 1.94 6.37 -2.39 -0.02 1.92 16 29 H 0.14 1.73 5.95 -2.39 -0.01 1.72 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 2.21 7.25 -2.39 -0.02 2.19 16 Total: -1.00 -72.89 259.93 3.81 -69.08 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.06 Total: 4.32 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.17 Total: -19.38 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -3.31 Total: -100.22 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -72.89 3.81 -69.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693987790.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.234 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds