Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99554 * 2 1 4 4 H 1.48499 * 109.46858 * 269.99558 * 3 2 1 5 5 H 1.48496 * 109.47375 * 30.00009 * 3 2 1 6 6 H 1.48500 * 109.46739 * 149.99986 * 3 2 1 7 7 C 1.37877 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99954 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99765 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46863 * 179.97438 * 9 7 2 11 11 O 1.21227 * 119.99873 * 0.02562 * 10 9 7 12 12 C 1.47402 * 119.99814 * 179.97438 * 10 9 7 13 13 C 1.39633 * 119.70869 * 180.02562 * 12 10 9 14 14 C 1.38425 * 119.07415 * 179.97438 * 13 12 10 15 15 C 1.38922 * 118.48299 * 359.97438 * 14 13 12 16 16 F 1.35104 * 120.33074 * 179.97438 * 15 14 13 17 17 C 1.38999 * 119.33403 * 359.97438 * 15 14 13 18 18 N 1.31369 * 120.88022 * 0.02562 * 17 15 14 19 19 H 0.97002 * 120.00041 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47276 * 59.99493 * 9 7 2 21 21 H 1.09001 * 109.47057 * 299.99587 * 9 7 2 22 22 H 1.08003 * 120.46419 * 0.25109 * 13 12 10 23 23 H 1.08003 * 120.75599 * 180.02562 * 14 13 12 24 24 H 1.08000 * 119.55867 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 8 3.2261 -3.5362 -0.0011 12 6 5.4631 -2.8841 -0.0001 13 6 5.9219 -4.2029 -0.0008 14 6 7.2856 -4.4407 -0.0014 15 6 8.1481 -3.3516 -0.0019 16 9 9.4858 -3.5406 -0.0019 17 6 7.6208 -2.0655 -0.0023 18 7 6.3219 -1.8693 -0.0017 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6807 0.8904 21 1 3.8752 -0.6796 -0.8895 22 1 5.2226 -5.0259 -0.0053 23 1 7.6703 -5.4499 -0.0023 24 1 8.2880 -1.2162 -0.0022 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703441137.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = -68.369074 kcal Electronic energy + Delta-G solvation = -12685.999121 eV Core-core repulsion = 10092.332385 eV Total energy + Delta-G solvation = -2593.666736 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.10963 -41.49237 -39.65661 -35.07189 -33.77275 -32.55586 -31.40083 -26.63331 -25.10554 -24.16743 -21.18943 -19.17276 -18.74533 -18.31828 -17.62609 -16.95329 -16.50778 -16.06084 -15.83073 -15.32869 -14.87978 -14.52017 -14.32606 -14.26876 -13.64208 -13.41254 -12.90045 -12.41685 -11.82608 -11.54884 -11.11591 -11.09614 -10.79231 -10.39257 -10.11142 -8.28255 -6.36312 -0.73058 0.01399 1.23593 1.40390 1.42620 1.55368 2.38006 2.59656 2.71024 2.90640 3.05750 3.36904 3.66775 3.72889 4.10760 4.41087 4.62234 4.70807 4.79862 4.93642 5.09034 5.40326 5.54734 6.20436 6.43580 6.74588 6.78167 7.27856 8.88546 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.053304 B = 0.007802 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.166891 B = 3588.051205 C = 4098.074592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.036 0.964 9 C -0.043 4.043 10 C 0.415 3.585 11 O -0.474 6.474 12 C 0.022 3.978 13 C -0.089 4.089 14 C -0.105 4.105 15 C 0.077 3.923 16 F -0.119 7.119 17 C 0.074 3.926 18 N -0.437 5.437 19 H 0.268 0.732 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.160 0.840 23 H 0.189 0.811 24 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.676 -4.875 0.025 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.055 0.945 9 C -0.080 4.080 10 C 0.293 3.707 11 O -0.348 6.348 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.131 4.131 15 C 0.055 3.945 16 F -0.098 7.098 17 C -0.089 4.089 18 N -0.148 5.148 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.178 0.822 23 H 0.206 0.794 24 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 19.761 -4.443 0.027 20.254 hybrid contribution 0.130 -0.208 -0.024 0.247 sum 19.891 -4.651 0.003 20.428 Atomic orbital electron populations 1.70077 1.08517 1.28396 1.51968 1.26052 0.95732 1.03666 0.93645 0.85621 0.79775 0.77436 0.79632 1.18748 1.20807 1.15924 1.21288 0.91131 0.93960 1.51606 0.94527 1.19774 0.95241 0.92643 1.00333 1.22738 0.86350 0.92314 0.69330 1.90417 1.58756 1.48598 1.37064 1.21811 0.95114 0.91061 1.03231 1.22343 0.96689 0.97163 0.94728 1.21954 0.91601 1.01198 0.98327 1.19153 0.78362 0.95648 1.01340 1.91564 1.28977 1.95957 1.93279 1.23531 0.91289 0.96599 0.97491 1.67691 1.03512 1.34914 1.08678 0.92268 0.91357 0.91519 0.82214 0.79357 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 14 2 C 0.01 0.36 5.47 84.65 0.46 0.82 14 3 Si 0.95 43.90 27.47 68.60 1.88 45.78 14 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 14 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 6 H -0.24 -9.85 6.54 99.48 0.65 -9.20 14 7 C -0.54 -32.93 9.48 25.60 0.24 -32.68 14 8 H 0.04 2.54 7.00 -2.91 -0.02 2.52 14 9 C -0.04 -2.08 4.00 29.10 0.12 -1.96 14 10 C 0.41 18.27 7.12 28.10 0.20 18.47 14 11 O -0.47 -23.64 15.42 -2.87 -0.04 -23.68 14 12 C 0.02 0.74 6.73 41.73 0.28 1.02 14 13 C -0.09 -2.26 9.63 22.65 0.22 -2.05 14 14 C -0.10 -1.89 10.15 22.48 0.23 -1.66 14 15 C 0.08 1.43 7.36 22.62 0.17 1.60 14 16 F -0.12 -2.02 17.28 44.97 0.78 -1.24 14 17 C 0.07 1.57 11.17 84.94 0.95 2.52 14 18 N -0.44 -13.19 9.78 -184.99 -1.81 -15.00 14 19 H 0.27 15.94 8.31 -92.71 -0.77 15.17 14 20 H 0.07 3.17 7.20 -2.39 -0.02 3.15 14 21 H 0.07 3.06 7.57 -2.39 -0.02 3.04 14 22 H 0.16 3.87 7.64 -2.91 -0.02 3.85 14 23 H 0.19 1.95 8.06 -2.91 -0.02 1.93 14 24 H 0.20 2.89 8.06 -2.91 -0.02 2.87 14 Total: -1.00 -73.56 229.61 5.14 -68.42 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.17 Total: 0.48 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 2.86 Total: -13.92 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.51 Total: -75.84 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -73.56 5.14 -68.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703441137.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.048 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds