Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36629 * 125.45874 * 158.63402 * 3 2 1 5 5 C 1.37610 * 113.27358 * 179.97438 * 4 3 2 6 6 C 1.33714 * 115.09423 * 359.97438 * 5 4 3 7 7 C 1.50703 * 124.51369 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47145 * 25.00162 * 7 6 5 9 9 O 1.42896 * 109.47115 * 145.00307 * 7 6 5 10 10 C 1.50700 * 109.47148 * 265.00141 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 S 1.70616 * 110.97803 * 0.26748 * 6 5 4 19 19 H 1.08001 * 123.36466 * 359.96259 * 4 3 2 20 20 H 1.07994 * 122.45459 * 179.97438 * 5 4 3 21 21 H 0.96699 * 114.00348 * 60.00095 * 9 7 6 22 22 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3601 1.0374 -0.4055 5 6 4.7053 0.7677 -0.2991 6 6 5.0046 -0.4456 0.1767 7 6 6.4060 -0.9612 0.3800 8 1 7.0860 -0.1206 0.5177 9 8 6.4423 -1.7979 1.5379 10 6 6.8288 -1.7567 -0.8280 11 1 6.1507 -1.8766 -1.6600 12 6 8.0816 -2.3307 -0.8715 13 7 8.9075 -2.1844 0.1414 14 14 8.6060 -3.3162 -2.3693 15 1 9.9873 -3.8233 -2.1693 16 1 7.6799 -4.4617 -2.5571 17 1 8.5679 -2.4464 -3.5723 18 16 3.5886 -1.3347 0.5166 19 1 2.9695 1.9749 -0.7729 20 1 5.4638 1.4835 -0.5794 21 1 5.8598 -2.5680 1.4852 22 1 8.6353 -1.6723 0.9190 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535699069.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -0.745557 kcal Electronic energy + Delta-G solvation = -10846.555235 eV Core-core repulsion = 8686.200956 eV Total energy + Delta-G solvation = -2160.354278 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.07969 -36.59117 -35.66140 -32.38688 -30.28489 -26.73151 -24.34540 -22.15699 -20.51211 -18.27972 -17.54225 -16.01458 -15.39916 -14.15289 -13.97719 -13.81656 -13.53242 -13.22218 -12.84987 -12.67717 -12.29814 -11.78397 -11.56934 -10.89380 -10.70736 -10.39612 -10.21507 -9.91598 -8.79557 -8.62221 -8.27096 -8.03051 -6.55668 -4.43676 0.82462 1.49567 2.26914 2.74899 3.07314 3.34466 3.34927 3.49794 3.54264 4.15919 4.37152 5.10494 5.34121 5.66326 5.70743 5.74406 6.22456 6.50424 6.61343 7.05187 7.57369 7.63057 8.12220 8.62563 8.69868 9.40647 10.83034 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.008608 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.126389 B = 3252.190318 C = 3376.934309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.298 3.702 3 C -0.218 4.218 4 C -0.042 4.042 5 C -0.182 4.182 6 C -0.146 4.146 7 C 0.266 3.734 8 H 0.077 0.923 9 O -0.572 6.572 10 C -0.645 4.645 11 H 0.057 0.943 12 C 0.039 3.961 13 N -0.883 5.883 14 Si 1.069 2.931 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.286 1.286 18 S 0.241 5.759 19 H 0.144 0.856 20 H 0.144 0.856 21 H 0.355 0.645 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 2.840 -0.608 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.016 4.016 3 C -0.338 4.338 4 C -0.079 4.079 5 C -0.210 4.210 6 C -0.267 4.267 7 C 0.207 3.793 8 H 0.095 0.905 9 O -0.377 6.377 10 C -0.683 4.683 11 H 0.075 0.925 12 C -0.171 4.171 13 N -0.516 5.516 14 Si 0.896 3.104 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.212 1.212 18 S 0.508 5.492 19 H 0.162 0.838 20 H 0.162 0.838 21 H 0.200 0.800 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.731 0.973 -0.450 6.816 hybrid contribution -0.922 2.098 -0.310 2.312 sum -7.653 3.071 -0.760 8.281 Atomic orbital electron populations 1.81228 1.11335 1.07944 1.10944 1.24398 0.91026 0.93517 0.92685 1.20262 0.88829 1.02766 1.21941 1.20626 0.92399 0.97852 0.97050 1.19780 0.95704 0.98080 1.07443 1.25968 1.03207 0.97762 0.99797 1.18453 0.83786 0.91141 0.85945 0.90514 1.86587 1.68559 1.39459 1.43086 1.22321 1.03966 1.38514 1.03517 0.92515 1.25882 0.92504 0.96427 1.02297 1.70667 1.37975 1.36179 1.06825 0.83553 0.76506 0.76114 0.74228 1.20544 1.21142 1.21193 1.82930 0.93165 1.13569 1.59524 0.83782 0.83800 0.79957 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.32 18.54 41.84 0.78 -6.55 14 2 C 0.30 4.66 15.83 -22.48 -0.36 4.30 14 3 C -0.22 -3.32 6.32 -38.24 -0.24 -3.56 14 4 C -0.04 -0.60 10.24 -40.39 -0.41 -1.01 14 5 C -0.18 -3.00 9.99 -41.40 -0.41 -3.42 14 6 C -0.15 -2.75 5.25 -35.89 -0.19 -2.94 14 7 C 0.27 6.06 2.84 -29.03 -0.08 5.97 14 8 H 0.08 1.86 7.99 -51.93 -0.42 1.44 14 9 O -0.57 -13.08 11.89 -35.23 -0.42 -13.49 14 10 C -0.65 -16.36 8.74 -34.44 -0.30 -16.66 14 11 H 0.06 1.44 7.74 -52.49 -0.41 1.03 14 12 C 0.04 1.03 5.40 -17.82 -0.10 0.93 14 13 N -0.88 -25.01 13.53 55.43 0.75 -24.26 14 14 Si 1.07 23.34 29.90 -169.99 -5.08 18.25 14 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 16 H -0.29 -5.97 7.11 56.52 0.40 -5.57 14 17 H -0.29 -5.98 7.11 56.52 0.40 -5.58 14 18 S 0.24 3.88 22.09 -107.50 -2.38 1.50 14 19 H 0.14 1.63 8.06 -52.49 -0.42 1.21 14 20 H 0.14 2.21 8.06 -52.49 -0.42 1.78 14 21 H 0.35 7.23 8.30 45.56 0.38 7.60 14 22 H 0.28 8.14 6.47 -40.82 -0.26 7.88 14 LS Contribution 228.50 15.07 3.44 3.44 Total: -1.00 -28.11 228.50 -5.35 -33.46 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -0.35 Total: 4.02 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.09 Total: -16.38 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 1.53 Total: -30.80 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.42 Total: -13.49 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.08 Total: 18.25 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.38 Total: 1.50 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.11 -5.35 -33.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535699069.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.715 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds