Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36629 * 125.45874 * 158.63402 * 3 2 1 5 5 C 1.37610 * 113.27358 * 179.97438 * 4 3 2 6 6 C 1.33714 * 115.09423 * 359.97438 * 5 4 3 7 7 C 1.50703 * 124.51369 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47145 * 25.00162 * 7 6 5 9 9 O 1.42896 * 109.47115 * 145.00307 * 7 6 5 10 10 C 1.50700 * 109.47148 * 265.00141 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 S 1.70616 * 110.97803 * 0.26748 * 6 5 4 19 19 H 1.08001 * 123.36466 * 359.96259 * 4 3 2 20 20 H 1.07994 * 122.45459 * 179.97438 * 5 4 3 21 21 H 0.96699 * 114.00348 * 60.00095 * 9 7 6 22 22 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3601 1.0374 -0.4055 5 6 4.7053 0.7677 -0.2991 6 6 5.0046 -0.4456 0.1767 7 6 6.4060 -0.9612 0.3800 8 1 7.0860 -0.1206 0.5177 9 8 6.4423 -1.7979 1.5379 10 6 6.8288 -1.7567 -0.8280 11 1 6.1507 -1.8766 -1.6600 12 6 8.0816 -2.3307 -0.8715 13 7 8.9075 -2.1844 0.1414 14 14 8.6060 -3.3162 -2.3693 15 1 9.9873 -3.8233 -2.1693 16 1 7.6799 -4.4617 -2.5571 17 1 8.5679 -2.4464 -3.5723 18 16 3.5886 -1.3347 0.5166 19 1 2.9695 1.9749 -0.7729 20 1 5.4638 1.4835 -0.5794 21 1 5.8598 -2.5680 1.4852 22 1 8.6353 -1.6723 0.9190 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535699069.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -19.064123 kcal Electronic energy + Delta-G solvation = -10847.349587 eV Core-core repulsion = 8686.200956 eV Total energy + Delta-G solvation = -2161.148631 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.46875 -38.11594 -37.14013 -34.36249 -31.75280 -28.38649 -25.97120 -23.83364 -21.80116 -19.70201 -19.46602 -17.36437 -17.00653 -15.79334 -15.49303 -15.23172 -15.13911 -14.67275 -14.40675 -14.28223 -13.66454 -13.24528 -12.94498 -12.59710 -12.35130 -11.94959 -11.91912 -11.59753 -10.67633 -10.45665 -9.56286 -9.50072 -8.61084 -6.50249 -0.47099 0.20704 0.94069 1.44800 1.59031 1.63889 1.83015 1.83819 2.25608 2.57395 2.88276 3.14188 3.85141 4.02959 4.37845 4.49451 4.91429 5.05539 5.31957 5.43922 5.73125 6.09725 6.32363 6.53401 6.95875 7.42503 8.75039 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.008608 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.126389 B = 3252.190318 C = 3376.934309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.313 3.687 3 C -0.210 4.210 4 C -0.029 4.029 5 C -0.171 4.171 6 C -0.187 4.187 7 C 0.267 3.733 8 H 0.052 0.948 9 O -0.583 6.583 10 C -0.646 4.646 11 H 0.055 0.945 12 C -0.010 4.010 13 N -0.915 5.915 14 Si 1.112 2.888 15 H -0.287 1.287 16 H -0.269 1.269 17 H -0.270 1.270 18 S 0.260 5.740 19 H 0.182 0.818 20 H 0.153 0.847 21 H 0.364 0.636 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 3.244 -1.624 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.001 4.001 3 C -0.330 4.330 4 C -0.066 4.066 5 C -0.200 4.200 6 C -0.308 4.308 7 C 0.208 3.792 8 H 0.070 0.930 9 O -0.389 6.389 10 C -0.684 4.684 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.550 5.550 14 Si 0.934 3.066 15 H -0.212 1.212 16 H -0.194 1.194 17 H -0.195 1.195 18 S 0.528 5.472 19 H 0.200 0.800 20 H 0.170 0.830 21 H 0.211 0.789 22 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.146 1.372 -1.463 8.389 hybrid contribution -0.598 2.028 0.038 2.115 sum -8.744 3.400 -1.425 9.489 Atomic orbital electron populations 1.81262 1.11861 1.08519 1.11466 1.24257 0.90769 0.92950 0.92128 1.20316 0.88614 1.02716 1.21378 1.20883 0.90991 0.98912 0.95801 1.20019 0.97088 0.97222 1.05661 1.25533 1.02317 0.99652 1.03310 1.18114 0.86045 0.90140 0.84852 0.93035 1.86529 1.69212 1.40085 1.43051 1.22620 1.03607 1.38051 1.04153 0.92685 1.27209 0.93100 0.97123 1.03889 1.70793 1.38797 1.38040 1.07411 0.82994 0.76055 0.75653 0.71903 1.21224 1.19446 1.19536 1.82803 0.91842 1.13323 1.59194 0.80049 0.82975 0.78943 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.04 18.54 19.00 0.35 -13.69 14 2 C 0.31 8.86 15.83 88.33 1.40 10.26 14 3 C -0.21 -5.76 6.32 23.14 0.15 -5.61 14 4 C -0.03 -0.73 10.24 21.74 0.22 -0.51 14 5 C -0.17 -5.26 9.99 21.09 0.21 -5.05 14 6 C -0.19 -6.86 5.25 24.66 0.13 -6.73 14 7 C 0.27 12.33 2.84 29.10 0.08 12.41 14 8 H 0.05 2.59 7.99 -2.39 -0.02 2.57 14 9 O -0.58 -27.09 11.89 -148.98 -1.77 -28.86 14 10 C -0.65 -32.80 8.74 25.60 0.22 -32.58 14 11 H 0.05 2.76 7.74 -2.91 -0.02 2.73 14 12 C -0.01 -0.52 5.40 84.65 0.46 -0.07 14 13 N -0.92 -52.89 13.53 21.45 0.29 -52.60 14 14 Si 1.11 46.56 29.90 68.60 2.05 48.61 14 15 H -0.29 -12.22 7.11 99.48 0.71 -11.51 14 16 H -0.27 -10.49 7.11 99.48 0.71 -9.78 14 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14 18 S 0.26 7.93 22.09 -56.49 -1.25 6.68 14 19 H 0.18 3.21 8.06 -2.91 -0.02 3.19 14 20 H 0.15 4.38 8.06 -2.91 -0.02 4.36 14 21 H 0.36 14.97 8.30 -74.06 -0.61 14.36 14 22 H 0.27 15.99 6.47 -92.70 -0.60 15.39 14 Total: -1.00 -59.63 228.50 3.36 -56.27 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.82 Total: 11.48 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 2.87 Total: -27.88 kcal Atomic # 7 Polarization: -66.93 SS G_CDS: 0.64 Total: -66.29 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.77 Total: -28.86 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.05 Total: 48.61 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -1.25 Total: 6.68 kcal Total: -59.63 3.36 -56.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535699069.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.206 kcal (2) G-P(sol) polarization free energy of solvation -59.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds