Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35954 * 123.44924 * 260.25725 * 3 2 1 5 5 S 1.70444 * 110.82710 * 179.85893 * 4 3 2 6 6 C 1.75505 * 92.44342 * 0.34920 * 5 4 3 7 7 C 1.50703 * 124.71909 * 179.78452 * 6 5 4 8 8 H 1.09000 * 109.46977 * 160.02239 * 7 6 5 9 9 O 1.42897 * 109.47222 * 40.01975 * 7 6 5 10 10 C 1.50707 * 109.46768 * 280.02144 * 7 6 5 11 11 H 1.07995 * 120.00005 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99789 * 180.02562 * 10 7 6 13 13 N 1.31521 * 119.99924 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00065 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47001 * 89.99871 * 14 12 10 16 16 H 1.48493 * 109.47176 * 210.00468 * 14 12 10 17 17 H 1.48504 * 109.46859 * 330.00347 * 14 12 10 18 18 C 1.32824 * 110.55858 * 359.79929 * 6 5 4 19 19 H 1.07997 * 124.58563 * 359.97438 * 4 3 2 20 20 H 0.96700 * 113.99988 * 299.99946 * 9 7 6 21 21 H 0.96997 * 119.99524 * 180.02562 * 13 12 10 22 22 H 1.07998 * 123.46576 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3173 0.1929 1.1180 5 16 4.9805 0.1268 0.7516 6 6 4.6705 -0.1568 -0.9524 7 6 5.7382 -0.3305 -2.0018 8 1 5.3141 -0.8315 -2.8720 9 8 6.8045 -1.1196 -1.4704 10 6 6.2674 1.0207 -2.4083 11 1 5.8707 1.9156 -1.9521 12 6 7.2581 1.1144 -3.3626 13 7 7.7409 0.0246 -3.9185 14 14 7.9137 2.7893 -3.8670 15 1 9.0610 3.1541 -2.9977 16 1 8.3608 2.7401 -5.2822 17 1 6.8402 3.8052 -3.7220 18 6 3.3641 -0.1968 -1.1885 19 1 2.9132 0.3626 2.1051 20 1 7.2294 -0.7336 -0.6922 21 1 8.4381 0.0906 -4.5896 22 1 2.9407 -0.3596 -2.1686 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535702739.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = 3.460122 kcal Electronic energy + Delta-G solvation = -10818.093921 eV Core-core repulsion = 8657.922014 eV Total energy + Delta-G solvation = -2160.171907 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.92673 -36.21581 -35.14071 -32.31445 -30.18184 -26.58783 -24.71203 -22.73408 -19.74999 -17.55899 -17.13442 -16.54972 -14.78718 -14.66883 -13.88789 -13.81294 -13.25268 -13.09499 -12.87888 -12.16468 -11.98293 -11.81708 -11.39283 -11.01776 -11.00071 -10.52362 -10.29754 -9.55450 -8.88317 -8.62840 -8.18105 -8.01345 -6.17295 -4.37852 1.09214 1.90242 2.31866 2.45728 2.91802 3.20747 3.28540 3.31731 3.73391 4.27561 4.35452 5.07065 5.11923 5.70396 5.81290 6.07423 6.28403 6.57165 6.64851 7.39155 7.66927 7.68965 7.89860 8.63412 9.08299 9.38146 10.86065 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.042865 B = 0.008918 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.060376 B = 3139.091285 C = 3317.263601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.288 3.712 3 C -0.053 4.053 4 C -0.226 4.226 5 S 0.205 5.795 6 C -0.154 4.154 7 C 0.286 3.714 8 H 0.082 0.918 9 O -0.554 6.554 10 C -0.570 4.570 11 H 0.062 0.938 12 C 0.081 3.919 13 N -0.856 5.856 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.135 4.135 19 H 0.166 0.834 20 H 0.346 0.654 21 H 0.264 0.736 22 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 0.663 7.757 8.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.028 4.028 3 C -0.073 4.073 4 C -0.367 4.367 5 S 0.472 5.528 6 C -0.272 4.272 7 C 0.226 3.774 8 H 0.099 0.901 9 O -0.357 6.357 10 C -0.608 4.608 11 H 0.080 0.920 12 C -0.126 4.126 13 N -0.491 5.491 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.163 4.163 19 H 0.183 0.817 20 H 0.190 0.810 21 H 0.074 0.926 22 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.146 0.312 7.965 8.569 hybrid contribution -0.551 1.254 -0.714 1.544 sum -3.697 1.566 7.251 8.288 Atomic orbital electron populations 1.81184 1.11994 1.10499 1.08245 1.25217 0.92003 0.92700 0.92920 1.16328 0.85061 1.11627 0.94315 1.25360 1.00247 1.08937 1.02111 1.82958 1.00536 1.66443 1.02871 1.26369 1.00032 1.02305 0.98492 1.18236 0.80156 0.92219 0.86792 0.90068 1.86662 1.50941 1.50188 1.47894 1.21528 1.22453 0.92015 1.24772 0.91957 1.25044 0.95820 0.96742 0.94992 1.70062 1.26125 1.27395 1.25490 0.86560 0.79358 0.83935 0.77965 1.20294 1.20971 1.19635 1.20825 0.91627 1.06228 0.97599 0.81671 0.81008 0.92587 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.65 18.54 41.83 0.78 -6.87 14 2 C 0.29 4.61 15.62 -22.47 -0.35 4.26 14 3 C -0.05 -0.83 5.84 -106.36 -0.62 -1.45 14 4 C -0.23 -3.08 10.78 29.91 0.32 -2.76 14 5 S 0.21 3.05 22.26 -107.50 -2.39 0.66 14 6 C -0.15 -2.91 5.36 -36.17 -0.19 -3.10 14 7 C 0.29 6.61 3.25 -29.03 -0.09 6.51 14 8 H 0.08 2.04 8.11 -51.93 -0.42 1.62 14 9 O -0.55 -13.03 12.67 -35.23 -0.45 -13.47 14 10 C -0.57 -14.35 8.75 -34.44 -0.30 -14.66 14 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 14 12 C 0.08 2.12 5.40 -17.82 -0.10 2.02 14 13 N -0.86 -23.63 12.84 55.43 0.71 -22.92 14 14 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 14 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 14 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 18 C -0.14 -2.35 10.18 -39.02 -0.40 -2.75 14 19 H 0.17 1.76 8.06 -52.49 -0.42 1.34 14 20 H 0.35 7.09 8.40 45.56 0.38 7.48 14 21 H 0.26 6.92 8.31 -40.82 -0.34 6.58 14 22 H 0.15 2.45 8.06 -52.49 -0.42 2.03 14 LS Contribution 231.02 15.07 3.48 3.48 Total: -1.00 -28.10 231.02 -5.05 -33.15 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -0.42 Total: 2.93 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.73 Total: -11.92 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 1.49 Total: -29.79 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.45 Total: -13.47 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.39 Total: 0.66 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.10 -5.05 -33.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535702739.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.609 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds