Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47486 * 300.00133 * 3 2 1 6 6 H 1.48504 * 109.47106 * 59.99770 * 3 2 1 7 7 C 1.38658 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99916 * 185.06046 * 9 7 2 11 11 C 1.38901 * 120.07097 * 354.48881 * 10 9 7 12 12 C 1.38070 * 119.93090 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.06951 * 359.74542 * 12 11 10 14 14 C 1.38281 * 120.13723 * 0.51050 * 13 12 11 15 15 C 1.50693 * 119.96315 * 179.76701 * 14 13 12 16 16 N 1.46901 * 109.47110 * 269.72260 * 15 14 13 17 17 O 1.46301 * 111.00114 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.06614 * 359.48973 * 14 13 12 19 19 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.03308 * 359.95536 * 11 10 9 21 21 H 1.08000 * 119.96577 * 179.97438 * 12 11 10 22 22 H 1.08004 * 119.93433 * 180.27446 * 13 12 11 23 23 H 1.09008 * 109.47174 * 149.72475 * 15 14 13 24 24 H 1.08998 * 109.48037 * 29.72288 * 15 14 13 25 25 H 1.00901 * 110.99996 * 303.95159 * 16 15 14 26 26 H 0.96705 * 114.00254 * 180.02562 * 17 16 15 27 27 H 1.08008 * 120.03278 * 180.23230 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0927 12 6 4.2026 -4.5967 0.2014 13 6 3.5688 -5.8197 0.3283 14 6 2.1878 -5.8885 0.3362 15 6 1.5014 -7.2234 0.4694 16 7 1.2714 -7.7911 -0.8658 17 8 0.6045 -9.0902 -0.7754 18 6 1.4369 -4.7343 0.2279 19 1 -0.4850 0.8400 -0.0004 20 1 3.9529 -2.4845 -0.0026 21 1 5.2814 -4.5467 0.1910 22 1 4.1538 -6.7232 0.4177 23 1 0.5461 -7.0917 0.9777 24 1 2.1307 -7.8995 1.0482 25 1 0.7441 -7.1539 -1.4437 26 1 0.4320 -9.5042 -1.6321 27 1 0.3582 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131968871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -7.296013 kcal Electronic energy + Delta-G solvation = -12964.221866 eV Core-core repulsion = 10496.663762 eV Total energy + Delta-G solvation = -2467.558104 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14501 -37.01530 -35.76416 -32.76228 -32.25456 -29.56861 -28.62919 -25.46409 -24.17922 -21.65184 -20.71516 -18.04757 -17.41412 -16.77552 -15.24263 -15.10198 -14.73887 -14.41345 -14.07904 -13.63090 -13.54241 -12.60255 -12.58320 -11.98332 -11.74594 -11.49314 -11.32044 -10.90100 -10.77609 -10.68055 -10.45348 -9.39648 -8.88711 -8.73056 -8.16558 -7.29839 -6.48454 -4.07959 1.92460 2.30656 3.08267 3.11794 3.17300 3.19021 3.93479 4.52817 4.98578 5.08133 5.17048 5.46296 5.67644 5.69929 5.89411 6.01312 6.13627 6.26296 6.57246 6.67423 6.84851 7.02111 7.22216 7.31127 7.36996 7.60727 7.73978 7.96116 8.97263 9.66243 10.69610 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.056122 B = 0.006823 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.795908 B = 4102.806832 C = 4509.278648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.152 3.848 11 C -0.226 4.226 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.052 4.052 15 C 0.099 3.901 16 N -0.498 5.498 17 O -0.439 6.439 18 C -0.182 4.182 19 H 0.270 0.730 20 H 0.128 0.872 21 H 0.110 0.890 22 H 0.109 0.891 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.338 0.662 26 H 0.381 0.619 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -8.677 -1.042 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.098 3.902 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.205 4.205 14 C -0.053 4.053 15 C -0.029 4.029 16 N -0.164 5.164 17 O -0.338 6.338 18 C -0.202 4.202 19 H 0.080 0.920 20 H 0.146 0.854 21 H 0.128 0.872 22 H 0.127 0.873 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.153 0.847 26 H 0.225 0.775 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.171 -8.607 -0.447 9.575 hybrid contribution -0.521 1.065 -0.346 1.235 sum 3.650 -7.542 -0.793 8.417 Atomic orbital electron populations 1.70046 1.05972 1.27605 1.46129 1.25297 0.95853 0.98852 0.96509 0.85637 0.79141 0.80318 0.78274 1.19075 1.20122 1.20126 1.21383 0.91849 0.80761 1.52912 0.88968 1.83977 1.34276 1.11402 1.78537 1.19276 0.90283 0.87982 0.92645 1.21241 0.93807 0.99125 1.10342 1.20765 0.98624 0.92245 0.97844 1.20471 0.93286 0.97130 1.09654 1.18933 0.93571 0.91668 1.01142 1.20913 0.99524 0.93008 0.89489 1.66587 1.39549 0.96203 1.14053 1.89421 1.83494 1.27843 1.33003 1.20052 0.99191 0.90092 1.10885 0.92043 0.85422 0.87179 0.87261 0.93384 0.89405 0.84740 0.77496 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 13.67 55.48 0.76 -24.37 15 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 15 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.32 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.39 -10.89 9.49 30.89 0.29 -10.60 15 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 15 9 O -0.18 -5.05 9.76 0.05 0.00 -5.04 15 10 C 0.15 3.63 6.65 -39.11 -0.26 3.37 15 11 C -0.23 -4.85 9.17 -39.40 -0.36 -5.22 15 12 C -0.08 -1.40 10.04 -39.61 -0.40 -1.79 15 13 C -0.19 -3.25 9.70 -39.53 -0.38 -3.63 15 14 C -0.05 -0.93 5.39 -104.65 -0.56 -1.50 15 15 C 0.10 1.54 6.35 -4.98 -0.03 1.51 15 16 N -0.50 -7.21 7.98 -11.41 -0.09 -7.31 15 17 O -0.44 -5.76 14.92 -13.92 -0.21 -5.96 15 18 C -0.18 -3.80 9.65 -39.40 -0.38 -4.18 15 19 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 20 H 0.13 2.74 5.64 -52.49 -0.30 2.44 15 21 H 0.11 1.68 8.06 -52.49 -0.42 1.25 15 22 H 0.11 1.66 8.06 -52.48 -0.42 1.24 15 23 H 0.05 0.74 8.09 -51.92 -0.42 0.32 15 24 H 0.09 1.30 8.08 -51.93 -0.42 0.88 15 25 H 0.34 4.59 8.98 -39.29 -0.35 4.24 15 26 H 0.38 3.08 9.30 45.56 0.42 3.51 15 27 H 0.11 2.32 8.06 -52.48 -0.42 1.90 15 LS Contribution 246.90 15.07 3.72 3.72 Total: -1.00 -31.22 246.90 -4.76 -35.98 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -1.74 Total: 8.73 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.18 Total: -21.07 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.67 Total: -31.67 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.21 Total: -11.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.22 -4.76 -35.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131968871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.688 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds