Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47486 * 300.00133 * 3 2 1 6 6 H 1.48504 * 109.47106 * 59.99770 * 3 2 1 7 7 C 1.38658 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99916 * 185.06046 * 9 7 2 11 11 C 1.38901 * 120.07097 * 354.48881 * 10 9 7 12 12 C 1.38070 * 119.93090 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.06951 * 359.74542 * 12 11 10 14 14 C 1.38281 * 120.13723 * 0.51050 * 13 12 11 15 15 C 1.50693 * 119.96315 * 179.76701 * 14 13 12 16 16 N 1.46901 * 109.47110 * 269.72260 * 15 14 13 17 17 O 1.46301 * 111.00114 * 180.02562 * 16 15 14 18 18 C 1.38118 * 120.06614 * 359.48973 * 14 13 12 19 19 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 20 20 H 1.07996 * 120.03308 * 359.95536 * 11 10 9 21 21 H 1.08000 * 119.96577 * 179.97438 * 12 11 10 22 22 H 1.08004 * 119.93433 * 180.27446 * 13 12 11 23 23 H 1.09008 * 109.47174 * 149.72475 * 15 14 13 24 24 H 1.08998 * 109.48037 * 29.72288 * 15 14 13 25 25 H 1.00901 * 110.99996 * 303.95159 * 16 15 14 26 26 H 0.96705 * 114.00254 * 180.02562 * 17 16 15 27 27 H 1.08008 * 120.03278 * 180.23230 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0927 12 6 4.2026 -4.5967 0.2014 13 6 3.5688 -5.8197 0.3283 14 6 2.1878 -5.8885 0.3362 15 6 1.5014 -7.2234 0.4694 16 7 1.2714 -7.7911 -0.8658 17 8 0.6045 -9.0902 -0.7754 18 6 1.4369 -4.7343 0.2279 19 1 -0.4850 0.8400 -0.0004 20 1 3.9529 -2.4845 -0.0026 21 1 5.2814 -4.5467 0.1910 22 1 4.1538 -6.7232 0.4177 23 1 0.5461 -7.0917 0.9777 24 1 2.1307 -7.8995 1.0482 25 1 0.7441 -7.1539 -1.4437 26 1 0.4320 -9.5042 -1.6321 27 1 0.3582 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131968871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -31.262980 kcal Electronic energy + Delta-G solvation = -12965.261152 eV Core-core repulsion = 10496.663762 eV Total energy + Delta-G solvation = -2468.597390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84462 -38.64524 -36.97774 -34.38963 -33.91852 -31.13670 -30.12555 -27.39812 -25.57810 -23.24197 -22.33499 -19.64903 -19.04115 -18.28988 -16.78999 -16.59524 -16.12623 -16.09924 -15.51833 -15.41426 -14.97658 -14.31451 -14.11272 -13.59299 -13.23074 -12.97681 -12.66734 -12.51600 -12.33410 -12.25917 -12.08206 -11.22484 -10.82647 -9.97238 -9.61022 -9.03424 -8.48084 -6.16729 0.38447 0.70240 1.35615 1.43448 1.53875 2.04398 2.17432 2.84150 3.14576 3.44004 3.80435 4.06199 4.26199 4.34711 4.45111 4.54495 4.70131 4.90055 5.01295 5.11697 5.24633 5.51837 5.64919 5.70232 5.75149 6.00923 6.16766 6.76691 6.96839 7.76602 8.75313 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.056122 B = 0.006823 C = 0.006208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.795908 B = 4102.806832 C = 4509.278648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.236 4.236 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.043 4.043 15 C 0.103 3.897 16 N -0.503 5.503 17 O -0.443 6.443 18 C -0.192 4.192 19 H 0.272 0.728 20 H 0.122 0.878 21 H 0.150 0.850 22 H 0.148 0.852 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.340 0.660 26 H 0.403 0.597 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -10.319 -0.991 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.256 4.256 12 C -0.088 4.088 13 C -0.185 4.185 14 C -0.044 4.044 15 C -0.026 4.026 16 N -0.168 5.168 17 O -0.346 6.346 18 C -0.212 4.212 19 H 0.082 0.918 20 H 0.139 0.861 21 H 0.168 0.832 22 H 0.165 0.835 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.155 0.845 26 H 0.250 0.750 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.443 -10.310 -0.413 12.164 hybrid contribution -1.143 1.184 -0.367 1.687 sum 5.300 -9.126 -0.780 10.582 Atomic orbital electron populations 1.70190 1.08050 1.28744 1.48950 1.26596 0.96850 1.02755 0.95849 0.84518 0.78316 0.74795 0.78516 1.17329 1.19364 1.19448 1.21888 0.92604 0.81361 1.53151 0.87910 1.83941 1.35920 1.12551 1.81501 1.19830 0.91677 0.87827 0.94444 1.21375 0.93021 1.00414 1.10760 1.21188 1.00512 0.91119 0.95985 1.21000 0.93175 0.98249 1.06087 1.19201 0.94073 0.91841 0.99259 1.20848 0.99586 0.91806 0.90327 1.66484 1.40211 0.96938 1.13158 1.89383 1.83247 1.26797 1.35161 1.20231 0.99389 0.90321 1.11256 0.91849 0.86054 0.83216 0.83463 0.93591 0.87777 0.84481 0.74979 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.34 13.67 21.61 0.30 -56.04 15 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 15 3 Si 1.02 42.50 29.55 68.60 2.03 44.53 15 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 7 C -0.41 -23.93 9.49 67.92 0.64 -23.29 15 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 15 9 O -0.23 -13.90 9.76 -22.73 -0.22 -14.12 15 10 C 0.11 5.54 6.65 22.58 0.15 5.69 15 11 C -0.24 -10.07 9.17 22.39 0.21 -9.86 15 12 C -0.07 -2.33 10.04 22.25 0.22 -2.11 15 13 C -0.17 -5.12 9.70 22.30 0.22 -4.91 15 14 C -0.04 -1.44 5.39 -19.89 -0.11 -1.55 15 15 C 0.10 2.91 6.35 85.55 0.54 3.45 15 16 N -0.50 -13.17 7.98 -190.01 -1.52 -14.69 15 17 O -0.44 -10.25 14.92 -50.16 -0.75 -10.99 15 18 C -0.19 -8.09 9.65 22.39 0.22 -7.88 15 19 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 20 H 0.12 5.23 5.64 -2.91 -0.02 5.22 15 21 H 0.15 3.80 8.06 -2.91 -0.02 3.78 15 22 H 0.15 3.56 8.06 -2.91 -0.02 3.53 15 23 H 0.05 1.32 8.09 -2.38 -0.02 1.30 15 24 H 0.10 2.63 8.08 -2.39 -0.02 2.62 15 25 H 0.34 8.63 8.98 -89.69 -0.81 7.83 15 26 H 0.40 5.27 9.30 -74.05 -0.69 4.58 15 27 H 0.11 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -70.46 246.90 2.11 -68.35 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.28 Total: 24.27 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.56 Total: -41.29 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.22 Total: -70.73 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.97 Total: -25.12 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -70.46 2.11 -68.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131968871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds