Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35732 * 125.54675 * 2 1 4 4 C 1.40119 * 107.12870 * 180.02562 * 3 2 1 5 5 C 1.38286 * 106.58162 * 359.97438 * 4 3 2 6 6 N 1.37366 * 126.04309 * 179.97438 * 5 4 3 7 7 C 1.46506 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.34773 * 120.00255 * 180.02562 * 6 5 4 9 9 O 1.21993 * 120.00108 * 359.97438 * 8 6 5 10 10 C 1.40422 * 120.00058 * 179.72860 * 8 6 5 11 11 H 1.08001 * 120.00290 * 0.26791 * 10 8 6 12 12 C 1.40105 * 120.00118 * 180.27559 * 10 8 6 13 13 N 1.30664 * 119.99753 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 120.00146 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47294 * 89.99879 * 14 12 10 16 16 H 1.48499 * 109.47218 * 209.99739 * 14 12 10 17 17 H 1.48491 * 109.47227 * 329.99927 * 14 12 10 18 18 O 1.34359 * 125.54188 * 180.31611 * 2 1 3 19 19 H 1.09002 * 109.46709 * 90.00382 * 1 2 3 20 20 H 1.09003 * 109.47349 * 209.99980 * 1 2 3 21 21 H 1.09000 * 109.47029 * 330.00644 * 1 2 3 22 22 H 1.08003 * 126.43831 * 0.02562 * 3 2 1 23 23 H 1.07998 * 126.71099 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.47508 * 269.99966 * 7 6 5 25 25 H 1.08995 * 109.47161 * 30.00473 * 7 6 5 26 26 H 1.09002 * 109.46900 * 149.99784 * 7 6 5 27 27 H 0.96999 * 119.99868 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2961 1.1044 0.0000 4 6 3.6255 0.6617 -0.0006 5 6 3.5812 -0.7205 -0.0003 6 7 4.6654 -1.5639 -0.0013 7 6 6.0226 -1.0122 -0.0021 8 6 4.4807 -2.8989 -0.0014 9 8 3.3506 -3.3584 -0.0003 10 6 5.5891 -3.7611 -0.0081 11 1 6.5896 -3.3544 -0.0087 12 6 5.3971 -5.1489 -0.0141 13 7 4.1866 -5.6409 -0.0129 14 14 6.8715 -6.2958 -0.0237 15 1 7.2662 -6.6063 1.3738 16 1 6.5157 -7.5535 -0.7286 17 1 8.0046 -5.6394 -0.7239 18 8 2.2880 -1.0932 -0.0060 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5137 22 1 1.9621 2.1315 0.0004 23 1 4.5116 1.2791 -0.0011 24 1 6.3586 -0.8751 -1.0299 25 1 6.0244 -0.0511 0.5120 26 1 6.6947 -1.6999 0.5112 27 1 4.0536 -6.6017 -0.0167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258789051.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = -17.540135 kcal Electronic energy + Delta-G solvation = -13624.204872 eV Core-core repulsion = 11156.202549 eV Total energy + Delta-G solvation = -2468.002323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.56717 -38.03000 -34.44660 -32.75890 -32.25901 -30.54705 -27.47602 -26.23424 -24.59299 -21.07808 -20.68994 -19.12632 -16.95472 -16.24747 -15.61623 -15.54590 -14.33659 -14.16777 -13.83853 -12.88946 -12.52359 -12.45759 -12.40397 -12.18202 -11.80287 -11.49748 -11.35478 -11.15220 -11.09619 -10.46623 -10.35716 -9.39465 -9.07402 -8.77168 -7.84746 -6.50372 -6.45774 -5.00838 2.59113 3.01219 3.07520 3.11669 3.26350 3.34476 3.94819 4.35749 4.67281 5.49592 5.57715 5.62405 5.76180 5.88813 5.90677 6.04751 6.14095 6.27402 6.34652 6.45347 6.66972 7.16426 7.16978 7.45479 7.87472 7.98124 8.24424 8.70775 9.12024 10.28430 10.48323 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.055164 B = 0.009088 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.453065 B = 3080.131049 C = 3567.126718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.086 4.086 3 C -0.176 4.176 4 C -0.317 4.317 5 C 0.289 3.711 6 N -0.545 5.545 7 C 0.099 3.901 8 C 0.530 3.470 9 O -0.549 6.549 10 C -0.532 4.532 11 H 0.078 0.922 12 C 0.085 3.915 13 N -0.741 5.741 14 Si 0.917 3.083 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.261 1.261 18 O -0.147 6.147 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.077 0.923 22 H 0.136 0.864 23 H 0.138 0.862 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 7.838 0.142 7.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C -0.196 4.196 4 C -0.342 4.342 5 C 0.136 3.864 6 N -0.277 5.277 7 C -0.043 4.043 8 C 0.341 3.659 9 O -0.431 6.431 10 C -0.566 4.566 11 H 0.096 0.904 12 C -0.139 4.139 13 N -0.368 5.368 14 Si 0.740 3.260 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.185 1.185 18 O -0.040 6.040 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.154 0.846 23 H 0.156 0.844 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.295 7.000 0.135 7.008 hybrid contribution 0.942 -0.327 -0.031 0.997 sum 1.237 6.673 0.105 6.787 Atomic orbital electron populations 1.20041 0.86208 1.02853 1.02298 1.22290 0.93436 0.84026 1.13887 1.21052 0.92609 0.97967 1.07951 1.21133 0.97882 0.90893 1.24304 1.19634 0.80105 0.88952 0.97710 1.45706 1.02286 1.06745 1.72918 1.21700 0.82178 0.98945 1.01501 1.17039 0.91417 0.78287 0.79144 1.90800 1.25259 1.72586 1.54448 1.19893 0.93437 0.91030 1.52262 0.90365 1.25845 0.96746 0.98889 0.92396 1.70043 1.21926 1.13673 1.31179 0.86214 0.81318 0.79282 0.79169 1.19352 1.20111 1.18497 1.84244 1.14567 1.33497 1.71674 0.91383 0.91251 0.90447 0.84598 0.84437 0.93083 0.92241 0.89345 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.41 36.00 0.37 -0.49 15 2 C -0.09 -1.74 7.33 -35.21 -0.26 -2.00 15 3 C -0.18 -3.26 10.78 -39.77 -0.43 -3.69 15 4 C -0.32 -6.36 10.05 -38.86 -0.39 -6.75 15 5 C 0.29 7.00 7.55 -15.05 -0.11 6.88 15 6 N -0.55 -13.47 3.03 -126.58 -0.38 -13.86 15 7 C 0.10 1.83 9.80 59.85 0.59 2.41 15 8 C 0.53 15.52 7.37 -15.44 -0.11 15.41 15 9 O -0.55 -18.36 13.60 -16.98 -0.23 -18.59 15 10 C -0.53 -14.56 8.53 -38.06 -0.32 -14.88 15 11 H 0.08 1.89 5.85 -52.49 -0.31 1.58 15 12 C 0.09 2.29 5.50 -17.35 -0.10 2.19 15 13 N -0.74 -21.63 11.70 55.55 0.65 -20.98 15 14 Si 0.92 19.11 29.56 -169.99 -5.02 14.08 15 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 16 H -0.28 -5.65 7.11 56.52 0.40 -5.24 15 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 18 O -0.15 -3.79 8.95 -17.12 -0.15 -3.94 15 19 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.14 2.01 8.06 -52.48 -0.42 1.58 15 23 H 0.14 2.35 7.27 -52.49 -0.38 1.97 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.06 0.92 6.83 -51.93 -0.35 0.57 15 26 H 0.09 1.57 6.09 -51.93 -0.32 1.26 15 27 H 0.27 7.18 8.29 -40.82 -0.34 6.84 15 LS Contribution 240.44 15.07 3.62 3.62 Total: -1.00 -34.94 240.44 -4.89 -39.83 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.61 Total: 0.75 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.76 Total: -0.91 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.27 Total: -34.84 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.38 Total: -22.53 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.94 -4.89 -39.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258789051.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.285 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds