Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38233 * 119.99846 * 279.72347 * 12 9 7 14 14 C 1.38237 * 120.00254 * 179.78673 * 13 12 9 15 15 C 1.38244 * 119.99499 * 0.46557 * 14 13 12 16 16 C 1.50696 * 119.99648 * 179.78600 * 15 14 13 17 17 F 1.39899 * 109.47231 * 269.97965 * 16 15 14 18 18 C 1.38231 * 119.99924 * 359.77148 * 15 14 13 19 19 C 1.38231 * 120.00059 * 99.99836 * 12 9 7 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 22 22 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 23 23 H 1.08001 * 120.00337 * 0.02562 * 13 12 9 24 24 H 1.07991 * 120.00525 * 180.25296 * 14 13 12 25 25 H 1.08991 * 109.47407 * 29.98026 * 16 15 14 26 26 H 1.09001 * 109.46615 * 149.98325 * 16 15 14 27 27 H 1.08001 * 120.00174 * 179.97438 * 18 15 14 28 28 H 1.07999 * 120.00354 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8341 -4.0390 -1.1775 14 6 3.7358 -5.0868 -1.1757 15 6 4.0265 -5.7464 0.0040 16 6 5.0058 -6.8918 0.0051 17 9 4.3216 -8.0906 -0.2229 18 6 3.4190 -5.3551 1.1824 19 6 2.5207 -4.3044 1.1813 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9653 -2.5259 -2.0381 22 1 -0.1570 -3.4139 -1.1908 23 1 2.6043 -3.5261 -2.0997 24 1 4.2106 -5.3923 -2.0963 25 1 5.7440 -6.7394 -0.7821 26 1 5.5088 -6.9386 0.9710 27 1 3.6457 -5.8707 2.1039 28 1 2.0460 -3.9989 2.1020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259976029.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -38.127145 kcal Electronic energy + Delta-G solvation = -13156.607539 eV Core-core repulsion = 10700.085286 eV Total energy + Delta-G solvation = -2456.522253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.56332 -38.98670 -35.12069 -31.93464 -30.71902 -30.17921 -26.71129 -24.85543 -22.51483 -21.88997 -20.06714 -16.92180 -16.42071 -15.94219 -15.81139 -15.01813 -14.65093 -14.11493 -13.78797 -13.60359 -12.97578 -12.91120 -12.14312 -11.98479 -11.53410 -11.15640 -10.81829 -10.72512 -10.48843 -10.22109 -10.02732 -8.97818 -8.51991 -8.36604 -7.99439 -7.52102 -6.20942 -4.04712 1.72826 1.82395 3.46497 3.47767 3.66670 4.17894 4.59396 4.71938 4.80693 4.91870 5.33916 5.34486 5.44384 5.70549 5.71136 5.92979 5.98629 6.09771 6.38371 6.42817 6.81853 6.84660 6.90732 7.34861 7.43529 7.93849 8.25361 8.61503 8.72444 9.02020 9.79132 11.18838 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.055389 B = 0.007394 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.391090 B = 3785.760459 C = 3930.240963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.038 3.962 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.609 4.609 8 H 0.046 0.954 9 C 0.234 3.766 10 H 0.039 0.961 11 N -0.829 5.829 12 C -0.053 4.053 13 C -0.124 4.124 14 C -0.099 4.099 15 C -0.168 4.168 16 C 0.113 3.887 17 F -0.218 7.218 18 C -0.099 4.099 19 C -0.125 4.125 20 H 0.290 0.710 21 H 0.326 0.674 22 H 0.303 0.697 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -10.270 -0.208 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.172 4.172 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.648 4.648 8 H 0.064 0.936 9 C 0.125 3.875 10 H 0.057 0.943 11 N -0.357 5.357 12 C -0.056 4.056 13 C -0.143 4.143 14 C -0.117 4.117 15 C -0.168 4.168 16 C 0.058 3.942 17 F -0.199 7.199 18 C -0.117 4.117 19 C -0.144 4.144 20 H 0.102 0.898 21 H 0.139 0.861 22 H 0.113 0.887 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.139 -7.970 0.052 10.699 hybrid contribution 0.863 -2.589 -0.232 2.739 sum 8.001 -10.559 -0.181 13.249 Atomic orbital electron populations 1.70557 1.06829 1.32806 1.42132 1.25645 0.96597 1.01846 0.93079 0.83631 0.74917 0.75721 0.76366 1.20855 1.21656 1.21628 1.21651 0.93366 0.90333 1.59411 0.93564 1.18420 0.88155 0.90618 0.90296 0.94337 1.59452 1.28563 1.42355 1.05305 1.21614 0.96449 0.95248 0.92263 1.20962 0.97554 0.97033 0.98704 1.20910 0.98038 0.96075 0.96695 1.19960 1.02408 0.99716 0.94749 1.20717 0.92270 0.78500 1.02717 1.92782 1.82556 1.48155 1.96399 1.20928 0.96786 0.97196 0.96816 1.21093 0.98902 0.95962 0.98452 0.89758 0.86050 0.88691 0.86254 0.86741 0.90445 0.90435 0.86710 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.51 55.43 0.75 -25.90 15 2 C 0.04 1.08 5.39 -17.82 -0.10 0.99 15 3 Si 1.06 25.08 29.90 -169.99 -5.08 20.00 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.29 -6.58 7.11 56.52 0.40 -6.17 15 7 C -0.61 -16.79 8.71 -34.44 -0.30 -17.09 15 8 H 0.05 1.30 7.74 -52.48 -0.41 0.89 15 9 C 0.23 5.70 2.47 -70.02 -0.17 5.53 15 10 H 0.04 1.02 7.87 -51.93 -0.41 0.61 15 11 N -0.83 -18.82 7.62 -6.65 -0.05 -18.87 15 12 C -0.05 -1.12 4.88 -104.63 -0.51 -1.63 15 13 C -0.12 -2.35 9.29 -39.58 -0.37 -2.72 15 14 C -0.10 -1.62 9.70 -39.58 -0.38 -2.01 15 15 C -0.17 -2.62 5.60 -104.62 -0.59 -3.21 15 16 C 0.11 1.38 7.67 36.00 0.28 1.65 15 17 F -0.22 -3.14 17.34 2.25 0.04 -3.10 15 18 C -0.10 -1.62 9.70 -39.58 -0.38 -2.00 15 19 C -0.13 -2.38 9.67 -39.58 -0.38 -2.77 15 20 H 0.29 8.67 6.39 -40.82 -0.26 8.41 15 21 H 0.33 7.11 7.34 -39.29 -0.29 6.82 15 22 H 0.30 6.09 9.06 -39.29 -0.36 5.74 15 23 H 0.12 2.20 6.66 -52.49 -0.35 1.85 15 24 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.08 0.78 8.08 -51.93 -0.42 0.36 15 26 H 0.08 0.78 8.09 -51.93 -0.42 0.36 15 27 H 0.11 1.56 8.06 -52.49 -0.42 1.13 15 28 H 0.12 2.18 8.04 -52.49 -0.42 1.76 15 LS Contribution 248.15 15.07 3.74 3.74 Total: -1.00 -30.44 248.15 -6.49 -36.93 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -2.97 Total: 10.45 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.91 Total: -23.25 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.70 Total: -44.77 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.44 -6.49 -36.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976029.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.197 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds