Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38233 * 119.99846 * 279.72347 * 12 9 7 14 14 C 1.38237 * 120.00254 * 179.78673 * 13 12 9 15 15 C 1.38244 * 119.99499 * 0.46557 * 14 13 12 16 16 C 1.50696 * 119.99648 * 179.78600 * 15 14 13 17 17 F 1.39899 * 109.47231 * 269.97965 * 16 15 14 18 18 C 1.38231 * 119.99924 * 359.77148 * 15 14 13 19 19 C 1.38231 * 120.00059 * 99.99836 * 12 9 7 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 22 22 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 23 23 H 1.08001 * 120.00337 * 0.02562 * 13 12 9 24 24 H 1.07991 * 120.00525 * 180.25296 * 14 13 12 25 25 H 1.08991 * 109.47407 * 29.98026 * 16 15 14 26 26 H 1.09001 * 109.46615 * 149.98325 * 16 15 14 27 27 H 1.08001 * 120.00174 * 179.97438 * 18 15 14 28 28 H 1.07999 * 120.00354 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8341 -4.0390 -1.1775 14 6 3.7358 -5.0868 -1.1757 15 6 4.0265 -5.7464 0.0040 16 6 5.0058 -6.8918 0.0051 17 9 4.3216 -8.0906 -0.2229 18 6 3.4190 -5.3551 1.1824 19 6 2.5207 -4.3044 1.1813 20 1 -0.4850 -0.8401 -0.0004 21 1 0.9653 -2.5259 -2.0381 22 1 -0.1570 -3.4139 -1.1908 23 1 2.6043 -3.5261 -2.0997 24 1 4.2106 -5.3923 -2.0963 25 1 5.7440 -6.7394 -0.7821 26 1 5.5088 -6.9386 0.9710 27 1 3.6457 -5.8707 2.1039 28 1 2.0460 -3.9989 2.1020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259976029.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -57.647705 kcal Electronic energy + Delta-G solvation = -13157.454014 eV Core-core repulsion = 10700.085286 eV Total energy + Delta-G solvation = -2457.368728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.58507 -40.41413 -36.90048 -33.79149 -32.18704 -31.67697 -28.31697 -26.56270 -24.07555 -23.40940 -21.60708 -18.92513 -17.76645 -17.12489 -16.82148 -16.48428 -16.31740 -15.55994 -15.52078 -15.13815 -14.64416 -14.29640 -13.88077 -13.55238 -13.17003 -12.62040 -12.48843 -12.13093 -11.94114 -11.76314 -11.73526 -10.90146 -10.50511 -9.88830 -9.64738 -9.28746 -8.41183 -6.27994 0.34033 0.44658 1.55257 1.62688 1.82020 2.60637 2.80258 3.29185 3.58833 3.79173 3.99936 4.14975 4.17248 4.18017 4.19511 4.55307 4.65911 4.77013 4.91676 5.03215 5.17003 5.44638 5.49611 5.77007 5.88436 6.05381 6.19036 6.63680 6.74180 6.99625 7.63744 8.95126 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.055389 B = 0.007394 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.391090 B = 3785.760459 C = 3930.240963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 1.111 2.889 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.036 0.964 9 C 0.238 3.762 10 H 0.006 0.994 11 N -0.835 5.835 12 C -0.084 4.084 13 C -0.136 4.136 14 C -0.097 4.097 15 C -0.162 4.162 16 C 0.112 3.888 17 F -0.229 7.229 18 C -0.096 4.096 19 C -0.143 4.143 20 H 0.278 0.722 21 H 0.331 0.669 22 H 0.317 0.683 23 H 0.116 0.884 24 H 0.146 0.854 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.147 0.853 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 -11.522 -0.456 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.934 3.066 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.655 4.655 8 H 0.054 0.946 9 C 0.128 3.872 10 H 0.024 0.976 11 N -0.364 5.364 12 C -0.086 4.086 13 C -0.154 4.154 14 C -0.115 4.115 15 C -0.162 4.162 16 C 0.058 3.942 17 F -0.211 7.211 18 C -0.114 4.114 19 C -0.162 4.162 20 H 0.089 0.911 21 H 0.145 0.855 22 H 0.128 0.872 23 H 0.134 0.866 24 H 0.164 0.836 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.164 0.836 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.374 -9.249 -0.197 13.170 hybrid contribution 0.209 -2.327 -0.145 2.341 sum 9.583 -11.577 -0.343 15.032 Atomic orbital electron populations 1.70675 1.07758 1.32124 1.44805 1.27014 0.96687 1.05497 0.92260 0.83022 0.74119 0.71972 0.77493 1.21108 1.20072 1.20007 1.21950 0.93055 0.92075 1.58388 0.94592 1.18087 0.88425 0.91209 0.89466 0.97587 1.59217 1.28787 1.43457 1.04961 1.21301 0.97576 0.95609 0.94161 1.21007 0.98466 0.98213 0.97734 1.21267 0.96881 0.94795 0.98523 1.20458 1.01858 1.00023 0.93893 1.20948 0.91384 0.76306 1.05569 1.92765 1.82962 1.48735 1.96610 1.21267 0.95394 0.95994 0.98708 1.21182 1.00139 0.97231 0.97640 0.91061 0.85526 0.87153 0.86601 0.83596 0.87627 0.87622 0.83572 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.40 13.51 21.45 0.29 -56.11 15 2 C -0.01 -0.63 5.39 84.65 0.46 -0.17 15 3 Si 1.11 50.71 29.90 68.60 2.05 52.77 15 4 H -0.29 -13.06 7.11 99.48 0.71 -12.36 15 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.62 -34.73 8.71 25.60 0.22 -34.51 15 8 H 0.04 2.05 7.74 -2.91 -0.02 2.03 15 9 C 0.24 11.98 2.47 43.42 0.11 12.09 15 10 H 0.01 0.35 7.87 -2.39 -0.02 0.33 15 11 N -0.84 -39.05 7.62 -174.95 -1.33 -40.38 15 12 C -0.08 -3.58 4.88 -19.87 -0.10 -3.67 15 13 C -0.14 -5.04 9.29 22.27 0.21 -4.84 15 14 C -0.10 -2.90 9.70 22.27 0.22 -2.69 15 15 C -0.16 -4.48 5.60 -19.87 -0.11 -4.60 15 16 C 0.11 2.20 7.67 71.23 0.55 2.75 15 17 F -0.23 -5.72 17.34 44.97 0.78 -4.94 15 18 C -0.10 -2.89 9.70 22.27 0.22 -2.67 15 19 C -0.14 -5.42 9.67 22.27 0.22 -5.21 15 20 H 0.28 17.26 6.39 -92.71 -0.59 16.67 15 21 H 0.33 14.75 7.34 -89.69 -0.66 14.09 15 22 H 0.32 13.14 9.06 -89.70 -0.81 12.33 15 23 H 0.12 4.26 6.66 -2.91 -0.02 4.24 15 24 H 0.15 3.41 8.06 -2.92 -0.02 3.39 15 25 H 0.11 1.55 8.08 -2.39 -0.02 1.53 15 26 H 0.11 1.55 8.09 -2.39 -0.02 1.53 15 27 H 0.15 3.43 8.06 -2.91 -0.02 3.41 15 28 H 0.11 4.29 8.04 -2.91 -0.02 4.27 15 Total: -1.00 -66.52 248.15 3.65 -62.87 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.11 Total: 29.31 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 1.98 Total: -43.51 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -1.04 Total: -96.49 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.77 kcal Total: -66.52 3.65 -62.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259976029.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.220 kcal (2) G-P(sol) polarization free energy of solvation -66.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds