Wall clock time and date at job start Mon Mar 30 2020 02:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00022 * 2 1 4 4 H 1.48497 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47187 * 299.99815 * 3 2 1 6 6 H 1.48501 * 109.46917 * 60.00117 * 3 2 1 7 7 C 1.37875 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00380 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.53729 * 302.84676 * 9 7 2 11 11 C 1.54229 * 110.60396 * 179.97438 * 9 7 2 12 12 C 1.51316 * 103.69018 * 241.40391 * 11 9 7 13 13 O 1.21235 * 125.39268 * 180.02562 * 12 11 9 14 14 N 1.34222 * 109.02153 * 0.13837 * 12 11 9 15 15 C 1.46504 * 122.71189 * 179.97438 * 14 12 11 16 16 C 1.52999 * 117.49693 * 14.79157 * 15 14 12 17 17 C 1.52998 * 117.49753 * 306.17063 * 15 14 12 18 18 C 1.33880 * 114.52131 * 359.85133 * 14 12 11 19 19 O 1.21229 * 125.38948 * 180.11772 * 18 14 12 20 20 H 0.97006 * 119.99933 * 0.02562 * 1 2 3 21 21 H 1.08992 * 110.60871 * 359.97438 * 11 9 7 22 22 H 1.08994 * 110.60198 * 122.81322 * 11 9 7 23 23 H 1.08993 * 115.54640 * 160.50228 * 15 14 12 24 24 H 1.08993 * 117.50029 * 0.02562 * 16 15 14 25 25 H 1.09007 * 117.49383 * 145.02410 * 16 15 14 26 26 H 1.08996 * 117.49818 * 214.98169 * 17 15 14 27 27 H 1.09000 * 117.50172 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.5799 -2.5533 0.8578 11 6 2.2298 -3.6911 0.0005 12 6 1.9133 -4.4144 -1.2903 13 8 2.4621 -5.4213 -1.6837 14 7 0.9303 -3.7603 -1.9286 15 6 0.3894 -4.2046 -3.2156 16 6 0.7238 -5.6270 -3.6693 17 6 1.3809 -4.4297 -4.3588 18 6 0.4832 -2.6707 -1.2920 19 8 -0.3976 -1.9380 -1.6882 20 1 -0.4850 0.8401 -0.0004 21 1 3.2616 -3.3401 0.0001 22 1 2.0459 -4.3383 0.8580 23 1 -0.5945 -3.8121 -3.4726 24 1 1.3458 -6.2323 -3.0101 25 1 -0.0403 -6.1707 -4.2250 26 1 1.0493 -4.1857 -5.3680 27 1 2.4358 -4.2476 -4.1533 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830628.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:18 Heat of formation + Delta-G solvation = -33.245867 kcal Electronic energy + Delta-G solvation = -13931.546851 eV Core-core repulsion = 11462.863477 eV Total energy + Delta-G solvation = -2468.683374 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94304 -37.54014 -36.31251 -34.60153 -32.98867 -30.54356 -26.13341 -23.74971 -22.68744 -22.17684 -20.65819 -18.61817 -16.88163 -16.43949 -15.72069 -14.96816 -14.58547 -14.28906 -13.76197 -13.22017 -13.04488 -12.69598 -12.61360 -12.12194 -11.29164 -11.06456 -10.92317 -10.87019 -10.64791 -10.28756 -10.16475 -9.52399 -9.20230 -8.79778 -8.59962 -8.47796 -6.16052 -4.28678 2.50686 3.21259 3.31468 3.33722 3.35827 3.69728 4.25234 4.36861 4.89586 5.12482 5.14767 5.26818 5.34147 5.69535 5.86820 5.87549 5.96741 6.05251 6.16116 6.42428 6.54359 6.74808 7.16720 7.68559 7.78738 7.99449 8.24373 8.70001 9.09862 9.36803 10.88110 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.045391 B = 0.010669 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.708162 B = 2623.846033 C = 2830.951046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.028 3.972 10 H 0.077 0.923 11 C -0.154 4.154 12 C 0.532 3.468 13 O -0.520 6.520 14 N -0.555 5.555 15 C 0.056 3.944 16 C -0.190 4.190 17 C -0.185 4.185 18 C 0.518 3.482 19 O -0.455 6.455 20 H 0.265 0.735 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -6.446 -2.875 7.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.007 3.993 10 H 0.095 0.905 11 C -0.194 4.194 12 C 0.324 3.676 13 O -0.397 6.397 14 N -0.299 5.299 15 C -0.048 4.048 16 C -0.228 4.228 17 C -0.223 4.223 18 C 0.308 3.692 19 O -0.322 6.322 20 H 0.075 0.925 21 H 0.128 0.872 22 H 0.116 0.884 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.209 -6.390 -3.294 7.290 hybrid contribution 0.339 0.975 -0.292 1.073 sum 1.548 -5.415 -3.586 6.677 Atomic orbital electron populations 1.70079 1.05774 1.27102 1.44202 1.25123 0.94971 0.99712 0.94131 0.86437 0.80109 0.83177 0.77796 1.19469 1.20847 1.20639 1.20786 0.92810 0.88251 1.55606 0.91137 1.19564 0.93440 0.94063 0.92241 0.90545 1.22655 1.03996 0.98366 0.94334 1.21200 0.77031 0.82498 0.86909 1.90540 1.53085 1.24195 1.71889 1.46910 1.35522 1.27637 1.19801 1.21810 0.98721 0.99562 0.84701 1.23669 1.03875 0.91408 1.03812 1.23223 0.99206 1.02953 0.96916 1.22642 0.81687 0.76795 0.88041 1.90649 1.28193 1.43126 1.70231 0.92499 0.87210 0.88360 0.84856 0.85457 0.88800 0.88375 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.76 11.29 55.43 0.63 -23.13 15 2 C 0.07 1.85 5.31 -17.82 -0.09 1.76 15 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.54 -13.78 8.54 -34.44 -0.29 -14.07 15 8 H 0.07 1.74 7.39 -52.48 -0.39 1.35 15 9 C 0.03 0.66 2.96 -91.98 -0.27 0.38 15 10 H 0.08 1.84 8.14 -51.93 -0.42 1.41 15 11 C -0.15 -2.89 6.65 -26.94 -0.18 -3.07 15 12 C 0.53 10.54 7.86 -10.93 -0.09 10.46 15 13 O -0.52 -10.54 14.51 5.60 0.08 -10.46 15 14 N -0.56 -11.54 2.92 -108.16 -0.32 -11.86 15 15 C 0.06 1.01 6.53 -67.93 -0.44 0.56 15 16 C -0.19 -2.93 9.73 -26.73 -0.26 -3.19 15 17 C -0.18 -2.92 10.06 -26.73 -0.27 -3.19 15 18 C 0.52 12.50 7.28 -11.09 -0.08 12.42 15 19 O -0.46 -12.49 15.50 5.60 0.09 -12.41 15 20 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.11 1.98 7.47 -51.93 -0.39 1.59 15 22 H 0.10 1.56 8.14 -51.93 -0.42 1.14 15 23 H 0.13 2.35 7.95 -51.93 -0.41 1.94 15 24 H 0.13 2.19 5.41 -51.93 -0.28 1.91 15 25 H 0.09 1.19 8.14 -51.92 -0.42 0.77 15 26 H 0.10 1.31 8.14 -51.93 -0.42 0.88 15 27 H 0.10 1.63 8.14 -51.93 -0.42 1.21 15 LS Contribution 237.22 15.07 3.57 3.57 Total: -1.00 -29.70 237.22 -5.66 -35.37 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.72 Total: 1.37 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.98 Total: 2.06 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.31 Total: -34.99 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.17 Total: -22.86 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.70 -5.66 -35.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830628.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.123 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds