Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00088 * 2 1 4 4 H 1.48502 * 109.47026 * 90.00813 * 3 2 1 5 5 H 1.48506 * 109.47303 * 210.00058 * 3 2 1 6 6 H 1.48493 * 109.47382 * 330.00730 * 3 2 1 7 7 C 1.37881 * 119.99463 * 180.28535 * 2 1 3 8 8 H 1.07994 * 120.00288 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99625 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.28688 * 294.31732 * 9 7 2 11 11 C 1.54262 * 110.32454 * 56.44108 * 9 7 2 12 12 C 1.54612 * 104.94826 * 118.87240 * 11 9 7 13 13 N 1.48569 * 104.63275 * 336.21790 * 12 11 9 14 14 C 1.48553 * 104.21977 * 39.45005 * 13 12 11 15 15 H 1.08997 * 110.51531 * 79.34596 * 14 13 12 16 16 C 1.53006 * 110.40992 * 201.73704 * 14 13 12 17 17 F 1.39903 * 109.46986 * 167.15193 * 16 14 13 18 18 F 1.39898 * 109.46979 * 287.15239 * 16 14 13 19 19 F 1.39901 * 109.47091 * 47.15068 * 16 14 13 20 20 H 0.97001 * 119.99892 * 359.71210 * 1 2 3 21 21 H 1.09001 * 110.32556 * 237.78764 * 11 9 7 22 22 H 1.09000 * 110.32518 * 0.02562 * 11 9 7 23 23 H 1.09003 * 110.42334 * 217.41177 * 12 11 9 24 24 H 1.08994 * 110.46455 * 95.04520 * 12 11 9 25 25 H 1.00900 * 110.99990 * 279.88783 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.6998 7 6 2.0044 -1.1941 -0.0059 8 1 1.4644 -2.1294 -0.0102 9 6 3.5114 -1.1942 -0.0065 10 1 3.8890 -0.7688 -0.9363 11 6 4.0477 -0.4003 1.2025 12 6 4.8629 -1.4260 2.0233 13 7 4.2968 -2.7460 1.6431 14 6 4.0477 -2.6293 0.1833 15 1 4.9742 -2.7658 -0.3744 16 6 3.0018 -3.6531 -0.2631 17 9 2.5672 -3.3423 -1.5560 18 9 3.5687 -4.9320 -0.2564 19 9 1.9133 -3.6209 0.6152 20 1 -0.4850 0.8401 0.0042 21 1 4.6901 0.4136 0.8662 22 1 3.2210 -0.0109 1.7966 23 1 4.7317 -1.2494 3.0909 24 1 5.9186 -1.3744 1.7572 25 1 3.4395 -2.9292 2.1428 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118961.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = -159.227569 kcal Electronic energy + Delta-G solvation = -14980.404419 eV Core-core repulsion = 11964.401328 eV Total energy + Delta-G solvation = -3016.003091 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.02220 -48.50986 -48.33993 -39.65008 -34.68312 -31.49222 -31.21305 -26.97330 -25.07479 -22.63944 -21.44464 -19.95851 -19.14927 -18.83402 -17.93883 -16.51578 -16.15207 -15.64526 -15.44102 -15.29759 -15.11746 -14.70990 -14.67502 -14.50012 -14.16848 -13.75955 -13.03991 -12.77001 -12.63260 -12.49785 -11.95027 -11.76396 -11.39629 -10.77005 -10.72466 -9.77159 -8.22210 -6.29132 1.31907 1.37364 1.44970 1.97908 2.36116 2.84621 3.06011 3.14589 3.34048 3.73843 4.07630 4.12394 4.33415 4.49665 4.61787 4.96059 4.98950 5.12782 5.27266 5.56590 5.72303 6.16879 6.27432 6.82702 7.36748 8.91034 Molecular weight = 209.07amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.016565 C = 0.013138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.251900 B = 1689.891104 C = 2130.710806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.243 1.243 6 H -0.306 1.306 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.017 4.017 10 H 0.044 0.956 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.651 5.651 14 C 0.044 3.956 15 H 0.138 0.862 16 C 0.463 3.537 17 F -0.186 7.186 18 F -0.188 7.188 19 F -0.180 7.180 20 H 0.262 0.738 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 -2.938 2.120 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.167 1.167 6 H -0.234 1.234 7 C -0.590 4.590 8 H 0.104 0.896 9 C -0.037 4.037 10 H 0.062 0.938 11 C -0.206 4.206 12 C -0.075 4.075 13 N -0.280 5.280 14 C -0.067 4.067 15 H 0.156 0.844 16 C 0.408 3.592 17 F -0.167 7.167 18 F -0.170 7.170 19 F -0.161 7.161 20 H 0.071 0.929 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.121 0.879 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.250 -3.281 2.105 11.906 hybrid contribution -1.444 1.364 -0.325 2.013 sum 9.806 -1.917 1.780 10.149 Atomic orbital electron populations 1.70052 1.08275 1.27633 1.52775 1.25789 0.95199 1.02577 0.94287 0.86057 0.79557 0.79372 0.78791 1.19184 1.16659 1.23384 1.22386 0.90674 0.96209 1.49745 0.89610 1.20468 0.95555 0.91518 0.96199 0.93808 1.23357 0.99505 0.99752 0.97982 1.23078 0.99471 0.84987 0.99995 1.63622 1.31792 1.31637 1.00910 1.23839 0.96062 0.92995 0.93826 0.84440 1.20515 0.82534 0.81083 0.75027 1.93149 1.90841 1.92881 1.39856 1.93134 1.84635 1.42902 1.96313 1.92983 1.57800 1.95737 1.69602 0.92896 0.90975 0.92847 0.89114 0.87904 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 13.96 21.45 0.30 -58.10 15 2 C 0.02 1.05 5.32 84.66 0.45 1.50 15 3 Si 0.94 42.87 24.28 68.60 1.67 44.54 15 4 H -0.27 -11.57 7.03 99.48 0.70 -10.87 15 5 H -0.24 -10.11 6.35 99.48 0.63 -9.47 15 6 H -0.31 -14.48 7.11 99.48 0.71 -13.77 15 7 C -0.55 -29.39 7.61 25.60 0.19 -29.19 15 8 H 0.09 4.99 3.94 -2.91 -0.01 4.98 15 9 C -0.02 -0.71 2.21 -10.64 -0.02 -0.74 15 10 H 0.04 1.85 7.60 -2.39 -0.02 1.84 15 11 C -0.17 -6.04 4.50 31.57 0.14 -5.89 15 12 C 0.05 1.52 7.47 86.53 0.65 2.17 15 13 N -0.65 -21.11 7.42 -478.56 -3.55 -24.67 15 14 C 0.04 1.58 3.26 45.07 0.15 1.73 15 15 H 0.14 4.13 8.14 -2.39 -0.02 4.12 15 16 C 0.46 18.44 2.58 71.98 0.19 18.62 15 17 F -0.19 -8.14 15.70 44.97 0.71 -7.43 15 18 F -0.19 -6.76 17.32 44.97 0.78 -5.98 15 19 F -0.18 -8.09 13.06 44.97 0.59 -7.51 15 20 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 21 H 0.07 2.36 7.21 -2.39 -0.02 2.34 15 22 H 0.05 2.19 5.91 -2.39 -0.01 2.18 15 23 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.34 11.92 7.68 -89.69 -0.69 11.23 15 Total: -1.00 -61.94 210.26 2.69 -59.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.46 Total: 11.70 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 1.74 Total: -11.81 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.25 Total: -82.77 kcal Atomic # 9 Polarization: -22.99 SS G_CDS: 2.07 Total: -20.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.67 Total: 44.54 kcal Total: -61.94 2.69 -59.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118961.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.973 kcal (2) G-P(sol) polarization free energy of solvation -61.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds