Wall clock time and date at job start Mon Mar 30 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.36382 * 128.03397 * 269.67391 * 10 9 7 12 12 O 1.35426 * 126.86284 * 0.02562 * 11 10 9 13 13 O 1.34170 * 106.27457 * 179.89145 * 11 10 9 14 14 N 1.20908 * 111.50187 * 0.41204 * 13 11 10 15 15 C 1.30325 * 111.78170 * 359.73988 * 14 13 11 16 16 C 1.50705 * 126.74278 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49972 * 8.77538 * 16 15 14 18 18 C 1.52996 * 117.49821 * 300.11041 * 16 15 14 19 19 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 21 21 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 22 22 H 0.96697 * 114.00067 * 89.99218 * 12 11 10 23 23 H 1.08995 * 115.54777 * 154.44112 * 16 15 14 24 24 H 1.08998 * 117.49888 * 359.97438 * 17 16 15 25 25 H 1.09001 * 117.50375 * 145.02122 * 17 16 15 26 26 H 1.08997 * 117.49929 * 214.97563 * 18 16 15 27 27 H 1.08994 * 117.50171 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0140 -2.6147 0.0124 11 6 4.3003 -3.3991 1.0907 12 8 4.1897 -3.0571 2.3964 13 8 4.7105 -4.5784 0.5995 14 7 4.7080 -4.5798 -0.6095 15 6 4.3032 -3.4396 -1.0937 16 6 4.1709 -3.0744 -2.5498 17 6 4.3458 -4.1941 -3.5777 18 6 5.4348 -3.1314 -3.4101 19 1 -0.4850 0.8400 0.0004 20 1 3.8746 -0.6844 -0.8877 21 1 3.8753 -0.6757 0.8924 22 1 3.3248 -3.2524 2.7823 23 1 3.4440 -2.2939 -2.7745 24 1 4.5569 -5.1948 -3.2008 25 1 3.7342 -4.1501 -4.4789 26 1 5.5392 -2.3889 -4.2011 27 1 6.3621 -3.4327 -2.9228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:34 Heat of formation + Delta-G solvation = 37.014971 kcal Electronic energy + Delta-G solvation = -13525.527026 eV Core-core repulsion = 11059.890390 eV Total energy + Delta-G solvation = -2465.636636 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.31528 -37.36202 -37.22733 -34.06757 -32.41096 -30.59921 -28.22730 -24.15503 -23.39311 -22.18975 -20.53492 -20.28669 -17.98668 -17.28375 -16.70172 -16.06386 -15.09277 -14.51594 -14.25398 -13.81405 -13.32182 -12.51371 -12.15336 -11.85278 -11.59170 -11.40731 -11.09203 -10.79441 -10.60772 -10.42531 -10.16643 -9.85601 -9.53940 -8.99243 -8.66722 -8.25370 -6.16538 -4.17091 1.85021 2.68257 3.20281 3.24216 3.32383 3.34735 4.14474 4.34129 4.47474 4.82750 5.14548 5.15051 5.24275 5.29779 5.67648 5.78011 5.90113 5.96222 6.17827 6.28719 6.46130 6.63785 6.95349 7.14838 7.56910 7.69937 8.38373 8.74790 8.85619 9.43091 10.96008 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.011708 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.804295 B = 2390.987684 C = 2997.390448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.286 1.286 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.054 3.946 10 C -0.133 4.133 11 C 0.111 3.889 12 O -0.429 6.429 13 O 0.073 5.927 14 N -0.363 5.363 15 C 0.056 3.944 16 C -0.074 4.074 17 C -0.168 4.168 18 C -0.167 4.167 19 H 0.266 0.734 20 H 0.035 0.965 21 H 0.031 0.969 22 H 0.401 0.599 23 H 0.136 0.864 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -4.568 -2.331 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.090 0.910 9 C 0.017 3.983 10 C -0.138 4.138 11 C 0.005 3.995 12 O -0.237 6.237 13 O 0.004 5.996 14 N -0.073 5.073 15 C -0.100 4.100 16 C -0.093 4.093 17 C -0.206 4.206 18 C -0.205 4.205 19 H 0.075 0.925 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.258 0.742 23 H 0.153 0.847 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.829 -5.368 -2.862 10.722 hybrid contribution -0.553 1.449 0.535 1.640 sum 8.275 -3.919 -2.327 9.448 Atomic orbital electron populations 1.69888 1.06258 1.27159 1.50215 1.24948 0.94721 0.99001 0.94262 0.86826 0.80438 0.83586 0.78856 1.19987 1.18804 1.21136 1.20861 0.88041 0.94620 1.52031 0.91024 1.18142 0.97052 0.85225 0.97910 1.21281 1.01753 1.01097 0.89637 1.21277 1.05904 0.85882 0.86434 1.84839 1.40101 1.80364 1.18378 1.84729 1.65335 1.33646 1.15933 1.73857 1.22307 1.21329 0.89811 1.22051 1.01058 0.90387 0.96507 1.20273 1.01885 1.02635 0.84504 1.22972 1.02308 0.95053 1.00226 1.23001 0.93134 1.02216 1.02136 0.92453 0.94689 0.95052 0.74161 0.84668 0.88398 0.88257 0.88142 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 20.68 27.46 -169.99 -4.67 16.01 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.26 -5.96 6.55 56.52 0.37 -5.59 15 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.52 -14.09 9.65 -34.44 -0.33 -14.43 15 8 H 0.07 2.14 7.98 -52.49 -0.42 1.72 15 9 C 0.05 1.28 4.53 -29.03 -0.13 1.15 15 10 C -0.13 -2.87 5.53 -104.25 -0.58 -3.45 15 11 C 0.11 2.19 8.71 30.06 0.26 2.45 15 12 O -0.43 -7.35 13.63 -41.04 -0.56 -7.91 15 13 O 0.07 1.40 11.21 -6.23 -0.07 1.33 15 14 N -0.36 -7.12 11.72 33.47 0.39 -6.72 15 15 C 0.06 1.13 6.82 -82.19 -0.56 0.57 15 16 C -0.07 -1.28 6.20 -91.77 -0.57 -1.85 15 17 C -0.17 -2.39 10.16 -26.69 -0.27 -2.66 15 18 C -0.17 -2.33 10.24 -26.69 -0.27 -2.60 15 19 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 20 H 0.03 0.81 7.21 -51.93 -0.37 0.44 15 21 H 0.03 0.73 7.56 -51.93 -0.39 0.34 15 22 H 0.40 5.11 9.06 45.56 0.41 5.52 15 23 H 0.14 2.43 8.14 -51.93 -0.42 2.00 15 24 H 0.10 1.44 7.94 -51.93 -0.41 1.03 15 25 H 0.10 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.10 1.19 8.14 -51.93 -0.42 0.76 15 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 246.68 15.07 3.72 3.72 Total: -1.00 -30.61 246.68 -5.01 -35.61 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.04 Total: 2.62 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.55 Total: -18.90 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 1.17 Total: -32.49 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.63 Total: -6.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.61 -5.01 -35.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.630 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds