Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.36382 * 128.03397 * 269.67391 * 10 9 7 12 12 O 1.35426 * 126.86284 * 0.02562 * 11 10 9 13 13 O 1.34170 * 106.27457 * 179.89145 * 11 10 9 14 14 N 1.20908 * 111.50187 * 0.41204 * 13 11 10 15 15 C 1.30325 * 111.78170 * 359.73988 * 14 13 11 16 16 C 1.50705 * 126.74278 * 179.97438 * 15 14 13 17 17 C 1.52998 * 117.49972 * 8.77538 * 16 15 14 18 18 C 1.52996 * 117.49821 * 300.11041 * 16 15 14 19 19 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 21 21 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 22 22 H 0.96697 * 114.00067 * 89.99218 * 12 11 10 23 23 H 1.08995 * 115.54777 * 154.44112 * 16 15 14 24 24 H 1.08998 * 117.49888 * 359.97438 * 17 16 15 25 25 H 1.09001 * 117.50375 * 145.02122 * 17 16 15 26 26 H 1.08997 * 117.49929 * 214.97563 * 18 16 15 27 27 H 1.08994 * 117.50171 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0140 -2.6147 0.0124 11 6 4.3003 -3.3991 1.0907 12 8 4.1897 -3.0571 2.3964 13 8 4.7105 -4.5784 0.5995 14 7 4.7080 -4.5798 -0.6095 15 6 4.3032 -3.4396 -1.0937 16 6 4.1709 -3.0744 -2.5498 17 6 4.3458 -4.1941 -3.5777 18 6 5.4348 -3.1314 -3.4101 19 1 -0.4850 0.8400 0.0004 20 1 3.8746 -0.6844 -0.8877 21 1 3.8753 -0.6757 0.8924 22 1 3.3248 -3.2524 2.7823 23 1 3.4440 -2.2939 -2.7745 24 1 4.5569 -5.1948 -3.2008 25 1 3.7342 -4.1501 -4.4789 26 1 5.5392 -2.3889 -4.2011 27 1 6.3621 -3.4327 -2.9228 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = 16.849796 kcal Electronic energy + Delta-G solvation = -13526.401453 eV Core-core repulsion = 11059.890390 eV Total energy + Delta-G solvation = -2466.511063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.85569 -38.80202 -38.50341 -35.82776 -34.28168 -32.26948 -30.03939 -25.66341 -25.17903 -23.30378 -22.23138 -21.71609 -19.49093 -19.03628 -18.55117 -17.50537 -16.55166 -16.20548 -15.85252 -15.19547 -15.00270 -14.33865 -13.93437 -13.57202 -12.99633 -12.68032 -12.54768 -12.42785 -12.30878 -11.93729 -11.81135 -11.66124 -11.21971 -10.78355 -10.40582 -9.90734 -8.30292 -6.36398 0.32193 1.14651 1.39677 1.40899 1.52247 1.67426 2.35804 2.90805 3.03947 3.09906 3.42867 3.78879 3.98523 4.10796 4.14709 4.39317 4.64565 4.71983 4.86867 4.99209 5.11325 5.20466 5.22598 5.30718 5.52554 6.22424 6.40122 6.67597 7.20651 7.27592 8.85666 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.011708 C = 0.009339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.804295 B = 2390.987684 C = 2997.390448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.244 1.244 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.029 0.971 9 C 0.066 3.934 10 C -0.175 4.175 11 C 0.129 3.871 12 O -0.428 6.428 13 O 0.074 5.926 14 N -0.369 5.369 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.154 4.154 18 C -0.143 4.143 19 H 0.269 0.731 20 H 0.040 0.960 21 H 0.035 0.965 22 H 0.422 0.578 23 H 0.122 0.878 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.684 -4.013 -2.887 10.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.168 1.168 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.047 0.953 9 C 0.028 3.972 10 C -0.179 4.179 11 C 0.022 3.978 12 O -0.239 6.239 13 O 0.007 5.993 14 N -0.080 5.080 15 C -0.099 4.099 16 C -0.132 4.132 17 C -0.191 4.191 18 C -0.181 4.181 19 H 0.078 0.922 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.283 0.717 23 H 0.140 0.860 24 H 0.111 0.889 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.482 -4.840 -3.396 12.034 hybrid contribution -1.112 1.172 0.751 1.782 sum 9.370 -3.668 -2.644 10.404 Atomic orbital electron populations 1.70034 1.08221 1.28365 1.51836 1.25843 0.95477 1.03027 0.93759 0.85748 0.79669 0.78440 0.79441 1.19057 1.16785 1.20832 1.21001 0.90162 0.93018 1.51472 0.95294 1.17895 0.94264 0.86875 0.98118 1.21218 1.04525 1.00974 0.91219 1.21319 1.03942 0.85539 0.86974 1.84784 1.41755 1.80254 1.17119 1.84727 1.65323 1.33255 1.16000 1.73837 1.23169 1.21180 0.89840 1.22426 0.99939 0.89900 0.97613 1.20354 1.04447 1.04498 0.83900 1.23068 1.02371 0.94140 0.99539 1.23119 0.91788 1.02139 1.01046 0.92241 0.94150 0.94643 0.71720 0.86024 0.88921 0.85989 0.85498 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 13.96 21.45 0.30 -56.63 15 2 C 0.02 0.94 5.47 84.65 0.46 1.40 15 3 Si 0.94 41.98 27.46 68.60 1.88 43.86 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.24 -10.04 6.55 99.48 0.65 -9.39 15 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 7 C -0.52 -28.69 9.65 25.60 0.25 -28.45 15 8 H 0.03 1.79 7.98 -2.91 -0.02 1.77 15 9 C 0.07 3.07 4.53 29.10 0.13 3.21 15 10 C -0.17 -7.47 5.53 -19.63 -0.11 -7.58 15 11 C 0.13 4.97 8.71 67.39 0.59 5.56 15 12 O -0.43 -14.05 13.63 -65.16 -0.89 -14.94 15 13 O 0.07 2.78 11.21 92.47 1.04 3.82 15 14 N -0.37 -14.17 11.72 -49.09 -0.58 -14.75 15 15 C 0.06 2.28 6.82 43.46 0.30 2.58 15 16 C -0.11 -3.79 6.20 -11.54 -0.07 -3.86 15 17 C -0.15 -4.06 10.16 30.62 0.31 -3.75 15 18 C -0.14 -3.62 10.24 30.62 0.31 -3.30 15 19 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 20 H 0.04 1.82 7.21 -2.39 -0.02 1.80 15 21 H 0.04 1.60 7.56 -2.39 -0.02 1.59 15 22 H 0.42 10.18 9.06 -74.06 -0.67 9.51 15 23 H 0.12 4.37 8.14 -2.39 -0.02 4.35 15 24 H 0.09 2.55 7.94 -2.39 -0.02 2.54 15 25 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 26 H 0.13 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 Total: -1.00 -65.64 246.68 4.39 -61.24 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.47 Total: 11.58 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 2.17 Total: -34.20 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.28 Total: -71.37 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.15 Total: -11.12 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Total: -65.64 4.39 -61.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds