Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 117.00306 * 2 1 4 4 C 1.36563 * 119.83096 * 359.97438 * 3 2 1 5 5 C 1.40812 * 119.97391 * 179.97438 * 4 3 2 6 6 C 1.40931 * 120.18381 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00450 * 152.24786 * 6 5 4 8 8 C 1.39806 * 119.99731 * 332.53633 * 6 5 4 9 9 N 1.30973 * 119.99926 * 162.43892 * 8 6 5 10 10 Si 1.86801 * 119.99947 * 342.42980 * 8 6 5 11 11 H 1.48499 * 109.46765 * 94.97991 * 10 8 6 12 12 H 1.48496 * 109.47206 * 214.97246 * 10 8 6 13 13 H 1.48497 * 109.47427 * 334.97827 * 10 8 6 14 14 C 1.41521 * 119.64382 * 0.25949 * 5 4 3 15 15 O 1.35708 * 120.17165 * 179.74164 * 14 5 4 16 16 C 1.38072 * 119.65897 * 359.46476 * 14 5 4 17 17 C 1.39134 * 120.01886 * 0.55549 * 16 14 5 18 18 N 1.39046 * 119.81624 * 179.71959 * 17 16 14 19 19 H 1.08997 * 109.47882 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47081 * 300.00397 * 1 2 3 21 21 H 1.09008 * 109.46919 * 60.00212 * 1 2 3 22 22 H 1.08001 * 120.01266 * 0.02562 * 4 3 2 23 23 H 0.96999 * 119.99941 * 179.97438 * 9 8 6 24 24 H 0.96701 * 113.99881 * 85.30223 * 15 14 5 25 25 H 1.07996 * 119.98568 * 180.27586 * 16 14 5 26 26 H 0.97003 * 119.99716 * 179.97438 * 18 17 16 27 27 H 0.96999 * 119.99911 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2994 2.3549 -0.0005 5 6 1.9357 3.6111 0.0000 6 6 1.1690 4.7936 -0.0011 7 1 1.5692 5.6972 0.4348 8 6 -0.1121 4.7956 -0.5610 9 7 -0.9521 5.7576 -0.2707 10 14 -0.6254 3.4264 -1.7233 11 1 -1.3450 2.3742 -0.9615 12 1 -1.5204 3.9772 -2.7724 13 1 0.5808 2.8392 -2.3600 14 6 3.3492 3.6798 -0.0045 15 8 3.9734 4.8848 -0.0093 16 6 4.0899 2.5146 0.0019 17 6 3.4467 1.2809 0.0010 18 7 4.1968 0.1101 0.0015 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 0.2211 2.2955 -0.0005 23 1 -1.8408 5.7592 -0.6594 24 1 4.0928 5.2694 0.8699 25 1 5.1689 2.5610 0.0030 26 1 3.7510 -0.7514 0.0012 27 1 5.1657 0.1550 0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719289.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -83.550979 kcal Electronic energy + Delta-G solvation = -13821.104858 eV Core-core repulsion = 11350.240091 eV Total energy + Delta-G solvation = -2470.864768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98425 -39.02378 -36.86195 -36.03287 -34.18876 -30.84055 -29.93576 -28.33775 -25.86096 -23.30053 -22.32611 -19.69892 -19.06714 -18.41457 -17.75651 -16.78732 -16.59754 -16.41517 -15.70561 -15.37121 -15.03194 -14.60220 -14.27078 -13.60096 -13.44536 -12.96716 -12.76116 -12.60801 -12.08727 -11.83718 -11.77010 -11.40398 -10.97335 -10.57878 -9.12903 -8.85859 -8.26756 -6.21204 0.67989 0.81482 1.16800 1.35445 1.44652 2.09978 2.49899 2.59918 3.30023 3.40332 3.95493 4.13261 4.31526 4.36779 4.63266 4.70324 4.83200 4.97013 5.18827 5.28004 5.50835 5.78715 5.98600 6.24774 6.46332 6.59686 6.82580 7.01422 7.29457 7.38984 8.23340 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.016692 C = 0.011075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.022390 B = 1677.008625 C = 2527.633318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C 0.073 3.927 4 C -0.274 4.274 5 C 0.033 3.967 6 C -0.467 4.467 7 H 0.059 0.941 8 C 0.043 3.957 9 N -0.857 5.857 10 Si 0.955 3.045 11 H -0.246 1.246 12 H -0.280 1.280 13 H -0.262 1.262 14 C 0.001 3.999 15 O -0.500 6.500 16 C -0.150 4.150 17 C 0.109 3.891 18 N -0.871 5.871 19 H 0.134 0.866 20 H 0.048 0.952 21 H 0.037 0.963 22 H 0.112 0.888 23 H 0.291 0.709 24 H 0.379 0.621 25 H 0.139 0.861 26 H 0.400 0.600 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -11.022 0.314 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.243 6.243 3 C 0.025 3.975 4 C -0.295 4.295 5 C 0.029 3.971 6 C -0.498 4.498 7 H 0.077 0.923 8 C -0.170 4.170 9 N -0.484 5.484 10 Si 0.780 3.220 11 H -0.171 1.171 12 H -0.207 1.207 13 H -0.186 1.186 14 C -0.045 4.045 15 O -0.309 6.309 16 C -0.173 4.173 17 C 0.007 3.993 18 N -0.416 5.416 19 H 0.152 0.848 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.130 0.870 23 H 0.101 0.899 24 H 0.233 0.767 25 H 0.157 0.843 26 H 0.228 0.772 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.358 -11.049 -0.296 11.552 hybrid contribution -0.584 0.237 0.189 0.659 sum 2.773 -10.812 -0.107 11.163 Atomic orbital electron populations 1.23252 0.78205 1.05123 1.00677 1.85818 1.21734 1.26661 1.90111 1.18128 0.90972 0.84097 1.04259 1.20633 0.98630 0.92150 1.18072 1.17891 0.92486 0.92505 0.94188 1.19113 0.98733 0.96838 1.35100 0.92287 1.26723 0.95046 0.98435 0.96789 1.69780 1.06936 1.33691 1.38038 0.85726 0.78734 0.78767 0.78800 1.17113 1.20739 1.18649 1.18425 0.89200 0.84656 1.12210 1.84691 1.79033 1.33470 1.33687 1.20448 0.99419 0.89536 1.07905 1.16556 0.86762 0.88139 1.07851 1.41567 1.07739 1.04105 1.88237 0.84799 0.93375 0.94480 0.87023 0.89916 0.76660 0.84296 0.77209 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.80 113.37 1.11 1.80 15 2 O -0.33 -12.10 9.71 -93.57 -0.91 -13.01 15 3 C 0.07 3.15 6.67 22.35 0.15 3.30 15 4 C -0.27 -13.24 6.02 22.51 0.14 -13.10 15 5 C 0.03 1.76 5.19 -21.18 -0.11 1.65 15 6 C -0.47 -26.98 9.20 23.31 0.21 -26.77 15 7 H 0.06 3.63 7.86 -2.91 -0.02 3.61 15 8 C 0.04 2.36 5.42 85.20 0.46 2.83 15 9 N -0.86 -48.28 13.94 21.81 0.30 -47.98 15 10 Si 0.96 43.93 23.66 68.60 1.62 45.55 15 11 H -0.25 -10.08 5.86 99.48 0.58 -9.50 15 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 13 H -0.26 -12.70 6.76 99.48 0.67 -12.03 15 14 C 0.00 0.06 6.73 23.04 0.16 0.22 15 15 O -0.50 -22.45 12.82 -90.28 -1.16 -23.61 15 16 C -0.15 -6.10 9.80 22.45 0.22 -5.88 15 17 C 0.11 4.29 6.78 38.69 0.26 4.55 15 18 N -0.87 -25.66 9.04 -50.83 -0.46 -26.12 15 19 H 0.13 2.87 8.14 -2.39 -0.02 2.85 15 20 H 0.05 1.51 7.64 -2.39 -0.02 1.50 15 21 H 0.04 1.22 6.00 -2.38 -0.01 1.20 15 22 H 0.11 5.29 2.60 -2.91 -0.01 5.28 15 23 H 0.29 14.75 8.30 -92.71 -0.77 13.98 15 24 H 0.38 13.68 9.06 -74.06 -0.67 13.01 15 25 H 0.14 4.75 8.06 -2.91 -0.02 4.72 15 26 H 0.40 10.79 8.15 -92.71 -0.76 10.04 15 27 H 0.40 9.45 8.83 -92.71 -0.82 8.63 15 Total: -1.00 -65.62 229.15 0.84 -64.78 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -1.16 Total: 31.80 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 2.60 Total: -31.42 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -0.16 Total: -74.10 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -2.07 Total: -36.62 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.62 Total: 45.55 kcal Total: -65.62 0.84 -64.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719289.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.772 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds