Wall clock time and date at job start Mon Mar 30 2020 02:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35194 * 119.60600 * 2 1 4 4 C 1.41281 * 119.32384 * 180.33672 * 3 2 1 5 5 O 1.22293 * 120.68128 * 179.66730 * 4 3 2 6 6 C 1.41799 * 118.63615 * 359.40059 * 4 3 2 7 7 O 1.36102 * 120.41069 * 180.29576 * 6 4 3 8 8 C 1.42901 * 117.00216 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99780 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99862 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99974 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47381 * 59.99691 * 13 11 9 15 15 H 1.48496 * 109.47442 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46791 * 299.99988 * 13 11 9 17 17 C 1.35430 * 119.17453 * 0.26903 * 6 4 3 18 18 N 1.35457 * 119.60267 * 179.70117 * 2 1 3 19 19 H 0.96995 * 119.26796 * 359.97438 * 18 2 1 20 20 H 1.08996 * 109.47300 * 270.30074 * 1 2 3 21 21 H 1.09001 * 109.47008 * 30.29562 * 1 2 3 22 22 H 1.08995 * 109.46936 * 150.29302 * 1 2 3 23 23 H 1.08004 * 120.33819 * 0.03639 * 3 2 1 24 24 H 1.09004 * 109.46924 * 300.00187 * 8 7 6 25 25 H 1.09002 * 109.46823 * 59.99939 * 8 7 6 26 26 H 0.97008 * 119.99815 * 179.97438 * 12 11 9 27 27 H 1.07999 * 119.69919 * 180.02562 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1749 1.1754 0.0000 4 6 3.5877 1.1685 -0.0072 5 8 4.2168 2.2171 -0.0135 6 6 4.2612 -0.0793 -0.0013 7 8 5.6213 -0.1281 -0.0019 8 6 6.2240 -1.4238 0.0049 9 6 7.7242 -1.2801 0.0038 10 1 8.1724 -0.2975 -0.0020 11 6 8.5243 -2.4029 0.0091 12 7 7.9783 -3.5993 0.0157 13 14 10.3837 -2.2247 0.0085 14 1 10.8096 -1.4750 1.2174 15 1 11.0100 -3.5711 0.0142 16 1 10.8097 -1.4863 -1.2075 17 6 3.5341 -1.2219 0.0056 18 7 2.1761 -1.1777 0.0061 19 1 1.6747 -2.0080 0.0109 20 1 -0.3634 0.0054 1.0276 21 1 -0.3633 0.8873 -0.5184 22 1 -0.3633 -0.8926 -0.5093 23 1 1.6340 2.1103 0.0006 24 1 5.9119 -1.9650 0.8982 25 1 5.9108 -1.9749 -0.8818 26 1 8.5413 -4.3893 0.0190 27 1 4.0383 -2.1770 0.0105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001776010155.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:59 Heat of formation + Delta-G solvation = -49.636870 kcal Electronic energy + Delta-G solvation = -13167.130850 eV Core-core repulsion = 10697.736709 eV Total energy + Delta-G solvation = -2469.394141 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64144 -37.63981 -36.94869 -32.96098 -32.40636 -30.45898 -27.90704 -26.93411 -23.88317 -21.84184 -21.74709 -18.66985 -17.23431 -16.22943 -15.78534 -15.49598 -15.28554 -14.50619 -14.10510 -13.95449 -13.17913 -13.01617 -12.72816 -12.63295 -12.32455 -12.18313 -11.18492 -11.03392 -11.01469 -10.26796 -10.25208 -9.30425 -8.90105 -8.75811 -8.50537 -7.01277 -6.24430 -4.26436 1.55576 1.84555 3.13041 3.29443 3.30981 3.36112 4.14480 4.21014 4.40528 4.55968 4.91071 5.13383 5.21248 5.22421 5.43750 5.59903 5.61160 6.07350 6.31869 6.60355 6.81085 7.10913 7.16974 7.25594 7.70580 7.96265 8.33099 8.69645 8.90394 9.38956 10.87134 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.060966 B = 0.007053 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.165119 B = 3968.858385 C = 4407.575837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.167 3.833 3 C -0.312 4.312 4 C 0.396 3.604 5 O -0.516 6.516 6 C 0.003 3.997 7 O -0.290 6.290 8 C 0.186 3.814 9 C -0.520 4.520 10 H 0.072 0.928 11 C 0.060 3.940 12 N -0.899 5.899 13 Si 0.915 3.085 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.025 4.025 18 N -0.567 5.567 19 H 0.414 0.586 20 H 0.085 0.915 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.267 0.733 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 0.238 0.027 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.339 4.339 4 C 0.288 3.712 5 O -0.402 6.402 6 C -0.050 4.050 7 O -0.202 6.202 8 C 0.113 3.887 9 C -0.558 4.558 10 H 0.090 0.910 11 C -0.142 4.142 12 N -0.538 5.538 13 Si 0.741 3.259 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.149 4.149 18 N -0.177 5.177 19 H 0.249 0.751 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.092 0.908 23 H 0.163 0.837 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.002 0.746 0.023 15.020 hybrid contribution 0.669 -0.912 0.005 1.131 sum -14.332 -0.166 0.029 14.333 Atomic orbital electron populations 1.20996 0.88500 1.04354 1.03890 1.20310 0.94276 0.86093 0.93972 1.21700 0.95156 0.97121 1.19896 1.16988 0.88822 0.87650 0.77764 1.90793 1.70097 1.34048 1.45292 1.20692 0.86541 0.94587 1.03156 1.86330 1.12417 1.35040 1.86367 1.20663 0.93784 0.77842 0.96369 1.20961 0.89087 0.94040 1.51713 0.90996 1.24921 1.00007 0.94601 0.94649 1.69928 1.36175 0.97618 1.50061 0.86278 0.83263 0.77203 0.79138 1.19786 1.21047 1.19791 1.21720 0.82425 1.00757 1.09981 1.40631 1.05592 1.07855 1.63648 0.75081 0.89623 0.89142 0.90825 0.83671 0.96273 0.96270 0.92366 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.07 36.01 0.36 -0.39 15 2 C 0.17 1.94 6.80 -82.08 -0.56 1.38 15 3 C -0.31 -4.88 9.60 -39.51 -0.38 -5.26 15 4 C 0.40 8.55 6.77 -37.07 -0.25 8.30 15 5 O -0.52 -13.28 17.72 -10.92 -0.19 -13.48 15 6 C 0.00 0.06 6.71 -39.22 -0.26 -0.20 15 7 O -0.29 -7.75 9.96 -35.64 -0.36 -8.11 15 8 C 0.19 5.04 4.50 36.01 0.16 5.20 15 9 C -0.52 -15.37 9.43 -34.44 -0.32 -15.70 15 10 H 0.07 2.15 7.81 -52.49 -0.41 1.74 15 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 12 N -0.90 -25.94 13.29 55.43 0.74 -25.21 15 13 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 15 14 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 17 C -0.03 -0.43 10.23 -16.77 -0.17 -0.60 15 18 N -0.57 -6.73 5.25 -9.21 -0.05 -6.78 15 19 H 0.41 3.12 8.76 -40.82 -0.36 2.77 15 20 H 0.09 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.09 0.50 8.07 -51.93 -0.42 0.08 15 22 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 15 23 H 0.15 1.97 8.06 -52.48 -0.42 1.55 15 24 H 0.02 0.52 7.67 -51.93 -0.40 0.13 15 25 H 0.02 0.53 7.67 -51.93 -0.40 0.13 15 26 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 27 H 0.17 2.84 6.23 -52.49 -0.33 2.51 15 LS Contribution 245.49 15.07 3.70 3.70 Total: -1.00 -35.87 245.49 -5.42 -41.29 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -2.71 Total: -2.51 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.52 Total: -5.67 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.69 Total: -31.99 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.55 Total: -21.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -35.87 -5.42 -41.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001776010155.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.350 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds