Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35194 * 119.60600 * 2 1 4 4 C 1.41281 * 119.32384 * 180.33672 * 3 2 1 5 5 O 1.22293 * 120.68128 * 179.66730 * 4 3 2 6 6 C 1.41799 * 118.63615 * 359.40059 * 4 3 2 7 7 O 1.36102 * 120.41069 * 180.29576 * 6 4 3 8 8 C 1.42901 * 117.00216 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47447 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99780 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99862 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99974 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47381 * 59.99691 * 13 11 9 15 15 H 1.48496 * 109.47442 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46791 * 299.99988 * 13 11 9 17 17 C 1.35430 * 119.17453 * 0.26903 * 6 4 3 18 18 N 1.35457 * 119.60267 * 179.70117 * 2 1 3 19 19 H 0.96995 * 119.26796 * 359.97438 * 18 2 1 20 20 H 1.08996 * 109.47300 * 270.30074 * 1 2 3 21 21 H 1.09001 * 109.47008 * 30.29562 * 1 2 3 22 22 H 1.08995 * 109.46936 * 150.29302 * 1 2 3 23 23 H 1.08004 * 120.33819 * 0.03639 * 3 2 1 24 24 H 1.09004 * 109.46924 * 300.00187 * 8 7 6 25 25 H 1.09002 * 109.46823 * 59.99939 * 8 7 6 26 26 H 0.97008 * 119.99815 * 179.97438 * 12 11 9 27 27 H 1.07999 * 119.69919 * 180.02562 * 17 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1749 1.1754 0.0000 4 6 3.5877 1.1685 -0.0072 5 8 4.2168 2.2171 -0.0135 6 6 4.2612 -0.0793 -0.0013 7 8 5.6213 -0.1281 -0.0019 8 6 6.2240 -1.4238 0.0049 9 6 7.7242 -1.2801 0.0038 10 1 8.1724 -0.2975 -0.0020 11 6 8.5243 -2.4029 0.0091 12 7 7.9783 -3.5993 0.0157 13 14 10.3837 -2.2247 0.0085 14 1 10.8096 -1.4750 1.2174 15 1 11.0100 -3.5711 0.0142 16 1 10.8097 -1.4863 -1.2075 17 6 3.5341 -1.2219 0.0056 18 7 2.1761 -1.1777 0.0061 19 1 1.6747 -2.0080 0.0109 20 1 -0.3634 0.0054 1.0276 21 1 -0.3633 0.8873 -0.5184 22 1 -0.3633 -0.8926 -0.5093 23 1 1.6340 2.1103 0.0006 24 1 5.9119 -1.9650 0.8982 25 1 5.9108 -1.9749 -0.8818 26 1 8.5413 -4.3893 0.0190 27 1 4.0383 -2.1770 0.0105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001776010155.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -76.328364 kcal Electronic energy + Delta-G solvation = -13168.288280 eV Core-core repulsion = 10697.736709 eV Total energy + Delta-G solvation = -2470.551571 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.05904 -39.25904 -38.61695 -35.09348 -33.56134 -31.96990 -29.82804 -28.10886 -25.74000 -23.59850 -23.00261 -20.16284 -18.90879 -18.17018 -17.24069 -17.10118 -16.90357 -16.45090 -15.50759 -15.42428 -14.81212 -14.44469 -13.95926 -13.87161 -13.31245 -13.25426 -13.08001 -12.92590 -12.86425 -12.17979 -12.14407 -11.44146 -10.73109 -10.50020 -9.97484 -8.62958 -8.41968 -6.54222 0.26044 0.38277 1.37360 1.41604 1.49885 1.94722 2.27564 2.70644 2.71756 2.92626 3.59878 3.76482 3.91209 4.18042 4.53607 4.61451 4.80584 4.88780 4.96072 4.97978 5.22982 5.30798 5.48765 5.78756 5.86859 6.24292 6.43873 6.71532 7.12591 7.21780 8.69757 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.060966 B = 0.007053 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.165119 B = 3968.858385 C = 4407.575837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.204 3.796 3 C -0.329 4.329 4 C 0.370 3.630 5 O -0.594 6.594 6 C -0.070 4.070 7 O -0.333 6.333 8 C 0.203 3.797 9 C -0.564 4.564 10 H 0.053 0.947 11 C 0.020 3.980 12 N -0.919 5.919 13 Si 0.982 3.018 14 H -0.269 1.269 15 H -0.265 1.265 16 H -0.269 1.269 17 C 0.031 3.969 18 N -0.539 5.539 19 H 0.444 0.556 20 H 0.111 0.889 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.165 0.835 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.276 0.724 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 -1.676 0.045 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 C -0.354 4.354 4 C 0.268 3.732 5 O -0.488 6.488 6 C -0.121 4.121 7 O -0.246 6.246 8 C 0.130 3.870 9 C -0.602 4.602 10 H 0.071 0.929 11 C -0.181 4.181 12 N -0.557 5.557 13 Si 0.804 3.196 14 H -0.194 1.194 15 H -0.190 1.190 16 H -0.194 1.194 17 C -0.096 4.096 18 N -0.150 5.150 19 H 0.285 0.715 20 H 0.129 0.871 21 H 0.124 0.876 22 H 0.125 0.875 23 H 0.182 0.818 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.626 -1.227 0.042 17.669 hybrid contribution 1.173 -0.484 0.003 1.269 sum -16.453 -1.712 0.045 16.542 Atomic orbital electron populations 1.21250 0.82999 1.06858 1.06168 1.21088 0.97076 0.84186 0.88790 1.21736 0.92187 0.99937 1.21529 1.17767 0.91228 0.86710 0.77526 1.90734 1.71701 1.35720 1.50614 1.21057 0.85248 0.96798 1.09005 1.86248 1.15546 1.34339 1.88456 1.20286 0.92946 0.78403 0.95367 1.21259 0.90969 0.93916 1.54030 0.92872 1.25812 1.04984 0.93949 0.93314 1.69983 1.38144 0.98225 1.49309 0.85253 0.76994 0.78069 0.79247 1.19362 1.18969 1.19374 1.21713 0.84423 0.99177 1.04256 1.40864 1.03849 1.09949 1.60384 0.71521 0.87057 0.87599 0.87450 0.81796 0.97049 0.97047 0.91532 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.07 71.24 0.72 0.02 15 2 C 0.20 3.88 6.80 41.30 0.28 4.16 15 3 C -0.33 -9.93 9.60 22.32 0.21 -9.72 15 4 C 0.37 16.82 6.77 23.90 0.16 16.99 15 5 O -0.59 -33.35 17.72 8.61 0.15 -33.19 15 6 C -0.07 -3.24 6.71 22.50 0.15 -3.09 15 7 O -0.33 -19.09 9.96 -79.82 -0.80 -19.89 15 8 C 0.20 11.56 4.50 71.24 0.32 11.88 15 9 C -0.56 -34.86 9.43 25.60 0.24 -34.62 15 10 H 0.05 3.38 7.81 -2.91 -0.02 3.36 15 11 C 0.02 1.12 5.46 84.65 0.46 1.58 15 12 N -0.92 -53.04 13.29 21.45 0.28 -52.75 15 13 Si 0.98 44.85 29.54 68.60 2.03 46.87 15 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 15 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 17 C 0.03 1.03 10.23 83.42 0.85 1.89 15 18 N -0.54 -10.61 5.25 -183.06 -0.96 -11.57 15 19 H 0.44 4.05 8.76 -92.71 -0.81 3.24 15 20 H 0.11 0.34 8.14 -2.39 -0.02 0.32 15 21 H 0.11 0.50 8.07 -2.39 -0.02 0.49 15 22 H 0.11 0.08 8.14 -2.39 -0.02 0.06 15 23 H 0.16 4.24 8.06 -2.91 -0.02 4.21 15 24 H 0.01 0.66 7.67 -2.38 -0.02 0.64 15 25 H 0.01 0.66 7.67 -2.39 -0.02 0.65 15 26 H 0.28 14.67 8.31 -92.70 -0.77 13.90 15 27 H 0.18 5.67 6.23 -2.91 -0.02 5.65 15 Total: -1.00 -86.61 245.49 4.49 -82.12 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 0.38 Total: -0.68 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 3.40 Total: -10.91 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.68 Total: -64.33 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.64 Total: -53.08 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -86.61 4.49 -82.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001776010155.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.793 kcal (2) G-P(sol) polarization free energy of solvation -86.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds