Wall clock time and date at job start Mon Mar 30 2020 02:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.46929 * 2 1 4 4 N 1.30870 * 125.81587 * 270.31041 * 3 2 1 5 5 N 1.40071 * 108.35713 * 180.11956 * 4 3 2 6 6 C 1.46506 * 126.07073 * 179.88064 * 5 4 3 7 7 C 1.35968 * 107.86340 * 359.61150 * 5 4 3 8 8 C 1.35712 * 107.54748 * 0.22969 * 7 5 4 9 9 N 1.40796 * 126.06346 * 180.02562 * 8 7 5 10 10 C 1.46496 * 120.00618 * 359.97438 * 9 8 7 11 11 C 1.50695 * 109.47503 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00063 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00166 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00145 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00105 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47170 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47177 * 120.00444 * 15 13 11 18 18 H 1.48506 * 109.46890 * 240.00308 * 15 13 11 19 19 H 1.09003 * 109.46941 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46915 * 299.99838 * 1 2 3 21 21 H 1.09001 * 109.47013 * 60.00039 * 1 2 3 22 22 H 1.09004 * 109.46915 * 240.00162 * 2 1 3 23 23 H 1.09001 * 109.47013 * 119.99961 * 2 1 3 24 24 H 1.09001 * 109.47060 * 269.69065 * 6 5 4 25 25 H 1.09004 * 109.47073 * 29.68554 * 6 5 4 26 26 H 1.09000 * 109.47212 * 149.68637 * 6 5 4 27 27 H 1.07992 * 126.22632 * 180.22953 * 7 5 4 28 28 H 0.97009 * 119.99893 * 179.97438 * 9 8 7 29 29 H 1.09002 * 109.47281 * 300.00258 * 10 9 8 30 30 H 1.09004 * 109.47065 * 59.99387 * 10 9 8 31 31 H 0.96999 * 120.00565 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2822 2.1448 -1.0612 5 7 2.7323 3.4029 -0.6410 6 6 3.1237 4.5141 -1.5118 7 6 2.7358 3.4118 0.7187 8 6 2.3059 2.1945 1.1370 9 7 2.1599 1.7819 2.4752 10 6 2.4858 2.7040 3.5658 11 6 2.2443 2.0232 4.8884 12 1 1.8845 1.0053 4.9140 13 6 2.4838 2.6996 6.0658 14 7 2.9224 3.9390 6.0347 15 14 2.1851 1.8554 7.7052 16 1 1.6966 0.4732 7.4685 17 1 3.4539 1.8065 8.4751 18 1 1.1679 2.6155 8.4752 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 4.1900 4.4480 -1.7281 25 1 2.5602 4.4616 -2.4434 26 1 2.9122 5.4593 -1.0120 27 1 3.0275 4.2375 1.3507 28 1 1.8435 0.8869 2.6750 29 1 3.5332 2.9968 3.4934 30 1 1.8551 3.5901 3.4932 31 1 3.0905 4.4150 6.8629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231084172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:41 Heat of formation + Delta-G solvation = 66.998819 kcal Electronic energy + Delta-G solvation = -13401.816231 eV Core-core repulsion = 11105.605638 eV Total energy + Delta-G solvation = -2296.210593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47492 -35.06174 -33.96623 -32.35783 -31.12625 -28.60077 -26.91486 -25.20965 -22.96859 -22.47875 -19.60851 -19.16733 -17.05244 -15.90549 -15.01036 -14.78054 -14.50792 -13.93881 -13.77607 -13.28580 -13.01254 -12.50459 -12.32834 -12.23230 -11.74860 -11.58468 -11.06070 -10.94198 -10.91598 -10.81655 -10.28757 -9.92156 -9.26262 -9.25435 -8.60172 -8.43333 -6.13463 -6.08527 -4.16786 2.42796 3.02828 3.26016 3.33427 3.37407 3.61787 4.34279 4.75368 5.07811 5.23832 5.27071 5.33773 5.39832 5.57545 5.62715 5.66789 5.87593 6.06939 6.11282 6.38684 6.47891 6.59321 7.00436 7.33820 7.59924 7.60910 7.74945 8.07070 8.24940 8.58552 8.88389 9.15057 9.49951 10.97508 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.035929 B = 0.007637 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.126299 B = 3665.663854 C = 4350.368158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C 0.025 3.975 4 N -0.288 5.288 5 N -0.385 5.385 6 C 0.118 3.882 7 C -0.052 4.052 8 C 0.090 3.910 9 N -0.734 5.734 10 C 0.264 3.736 11 C -0.531 4.531 12 H 0.062 0.938 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.388 0.612 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.469 -2.206 -11.098 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.144 4.144 4 N -0.113 5.113 5 N -0.174 5.174 6 C -0.024 4.024 7 C -0.198 4.198 8 C -0.020 4.020 9 N -0.368 5.368 10 C 0.142 3.858 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.729 3.271 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.184 0.816 28 H 0.221 0.779 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.295 -1.716 -12.174 12.362 hybrid contribution -0.111 -0.393 1.968 2.010 sum -1.406 -2.109 -10.205 10.515 Atomic orbital electron populations 1.21712 0.94824 1.01290 1.02364 1.19779 0.95708 0.89317 1.02605 1.21920 1.05264 0.97349 0.89879 1.76916 1.20236 0.91287 1.22839 1.47756 1.54674 1.10674 1.04342 1.21582 1.00362 0.86216 0.94254 1.21627 1.13852 1.00268 0.84052 1.17816 1.04328 0.92937 0.86911 1.44580 1.75449 1.16824 0.99960 1.18873 0.94798 0.88825 0.83257 1.21283 1.45200 0.99901 0.90575 0.92023 1.24928 0.94935 0.94879 0.99394 1.69959 1.45090 1.10296 1.27721 0.86395 0.77886 0.79593 0.83260 1.19647 1.20897 1.20890 0.92515 0.92213 0.92825 0.91038 0.90494 0.91802 0.90268 0.90102 0.81602 0.77861 0.97155 0.97153 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 37.16 0.37 -1.55 16 2 C -0.03 -0.51 6.34 -27.88 -0.18 -0.69 16 3 C 0.02 0.46 6.48 -82.26 -0.53 -0.07 16 4 N -0.29 -5.38 12.57 33.74 0.42 -4.95 16 5 N -0.38 -6.70 4.04 -67.78 -0.27 -6.98 16 6 C 0.12 1.40 11.48 59.85 0.69 2.09 16 7 C -0.05 -1.01 10.85 -16.62 -0.18 -1.19 16 8 C 0.09 1.87 6.95 -83.90 -0.58 1.29 16 9 N -0.73 -16.31 5.79 -59.97 -0.35 -16.66 16 10 C 0.26 6.89 5.33 -5.20 -0.03 6.86 16 11 C -0.53 -14.65 9.28 -34.44 -0.32 -14.97 16 12 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 15 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.09 7.69 -51.93 -0.40 0.70 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.17 3.16 7.85 -52.49 -0.41 2.75 16 28 H 0.39 8.09 7.83 -40.82 -0.32 7.77 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -31.15 271.17 -5.73 -36.88 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.47 Total: 3.39 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.86 Total: -6.64 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.54 Total: -53.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.15 -5.73 -36.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231084172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.875 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds