Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34943 * 126.12727 * 2 1 4 4 H 0.97003 * 126.03349 * 0.03613 * 3 2 1 5 5 N 1.40083 * 107.92724 * 179.79509 * 3 2 1 6 6 C 1.30837 * 108.20250 * 0.41382 * 5 3 2 7 7 C 1.50698 * 125.89640 * 179.85486 * 6 5 3 8 8 H 1.09004 * 109.47206 * 179.69293 * 7 6 5 9 9 C 1.50699 * 109.47406 * 59.69135 * 7 6 5 10 10 H 1.07993 * 120.00121 * 295.01823 * 9 7 6 11 11 C 1.37886 * 119.99987 * 115.01627 * 9 7 6 12 12 N 1.31510 * 119.99735 * 184.85612 * 11 9 7 13 13 Si 1.86797 * 119.99955 * 4.85436 * 11 9 7 14 14 H 1.48504 * 109.47083 * 84.69109 * 13 11 9 15 15 H 1.48497 * 109.47154 * 204.68869 * 13 11 9 16 16 H 1.48501 * 109.47031 * 324.68909 * 13 11 9 17 17 C 1.53001 * 109.47330 * 299.69047 * 7 6 5 18 18 N 1.46900 * 109.47138 * 185.46573 * 17 7 6 19 19 C 1.35322 * 126.12753 * 180.02562 * 2 1 3 20 20 C 1.50698 * 126.03802 * 359.97438 * 19 2 1 21 21 H 1.09004 * 109.46749 * 269.95201 * 1 2 3 22 22 H 1.08997 * 109.47299 * 29.95603 * 1 2 3 23 23 H 1.09007 * 109.46816 * 149.96088 * 1 2 3 24 24 H 0.97006 * 119.99841 * 180.02562 * 12 11 9 25 25 H 1.09000 * 109.46933 * 305.46600 * 17 7 6 26 26 H 1.08995 * 109.46974 * 65.46489 * 17 7 6 27 27 H 1.00906 * 111.00074 * 184.88233 * 18 17 7 28 28 H 1.00900 * 111.00191 * 308.83338 * 18 17 7 29 29 H 1.08999 * 109.47299 * 269.97458 * 20 19 2 30 30 H 1.08996 * 109.47718 * 29.97670 * 20 19 2 31 31 H 1.09000 * 109.47231 * 149.97685 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3026 1.0899 0.0000 4 1 2.0055 2.0133 0.0005 5 7 3.6334 0.6524 0.0048 6 6 3.6335 -0.6559 -0.0015 7 6 4.8543 -1.5394 -0.0025 8 1 4.5462 -2.5850 -0.0027 9 6 5.6784 -1.2590 1.2276 10 1 6.1404 -0.2917 1.3591 11 6 5.8426 -2.2373 2.1853 12 7 6.4807 -1.9635 3.3022 13 14 5.1587 -3.9513 1.8963 14 1 6.1350 -4.7478 1.1102 15 1 4.9168 -4.6146 3.2027 16 1 3.8807 -3.8544 1.1462 17 6 5.6896 -1.2537 -1.2521 18 7 6.8085 -2.2032 -1.3208 19 6 2.3049 -1.0930 -0.0005 20 6 1.8433 -2.5276 -0.0006 21 1 -0.3633 -0.0009 1.0277 22 1 -0.3634 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5145 24 1 6.5965 -2.6519 3.9758 25 1 5.0656 -1.3628 -2.1390 26 1 6.0786 -0.2366 -1.2043 27 1 7.4203 -1.9857 -2.0931 28 1 7.3185 -2.2246 -0.4504 29 1 1.7329 -2.8738 1.0270 30 1 0.8845 -2.6008 -0.5137 31 1 2.5789 -3.1459 -0.5152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259531095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = 54.954031 kcal Electronic energy + Delta-G solvation = -14028.770662 eV Core-core repulsion = 11732.037768 eV Total energy + Delta-G solvation = -2296.732894 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.56761 -35.39189 -32.31110 -32.13718 -31.81496 -28.70658 -27.36049 -24.97035 -24.18541 -21.48274 -18.89085 -18.32545 -17.10336 -16.37094 -14.81558 -14.63476 -14.15473 -13.85617 -13.45172 -12.70357 -12.60675 -12.46994 -12.25824 -12.02787 -11.90649 -11.85389 -11.17048 -11.04724 -10.59863 -9.93846 -9.82077 -9.61360 -9.05718 -8.51146 -8.27124 -7.73968 -7.60986 -6.05228 -4.06316 2.54656 3.39805 3.45631 3.49309 3.57348 3.66201 4.48688 5.08544 5.26453 5.30733 5.57409 5.60052 5.67541 5.87621 5.93323 6.20152 6.27289 6.32993 6.42811 6.61155 6.72948 6.82681 6.94229 7.17654 7.54912 7.75424 7.99462 8.11539 8.41206 8.49837 8.68140 9.02597 9.56777 11.06688 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.012461 C = 0.011248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.928691 B = 2246.472913 C = 2488.707021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.061 3.939 3 N -0.495 5.495 4 H 0.427 0.573 5 N -0.292 5.292 6 C 0.128 3.872 7 C 0.077 3.923 8 H 0.066 0.934 9 C -0.501 4.501 10 H 0.074 0.926 11 C 0.075 3.925 12 N -0.897 5.897 13 Si 0.874 3.126 14 H -0.269 1.269 15 H -0.295 1.295 16 H -0.253 1.253 17 C 0.082 3.918 18 N -0.850 5.850 19 C -0.240 4.240 20 C -0.069 4.069 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.264 0.736 25 H 0.041 0.959 26 H 0.020 0.980 27 H 0.322 0.678 28 H 0.354 0.646 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 0.926 -7.357 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 N -0.202 5.202 4 H 0.269 0.731 5 N -0.113 5.113 6 C -0.040 4.040 7 C 0.055 3.945 8 H 0.084 0.916 9 C -0.539 4.539 10 H 0.092 0.908 11 C -0.127 4.127 12 N -0.534 5.534 13 Si 0.701 3.299 14 H -0.194 1.194 15 H -0.222 1.222 16 H -0.178 1.178 17 C -0.050 4.050 18 N -0.380 5.380 19 C -0.252 4.252 20 C -0.127 4.127 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.132 0.868 28 H 0.169 0.831 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.887 1.346 -7.272 12.347 hybrid contribution -0.413 -0.085 0.351 0.548 sum -10.300 1.261 -6.921 12.473 Atomic orbital electron populations 1.20342 0.88378 1.02929 1.02661 1.20654 0.93666 0.88200 1.04113 1.46238 1.04961 1.07187 1.61854 0.73146 1.77363 0.94276 1.13387 1.26286 1.23084 0.95660 0.91330 0.93976 1.17969 0.87743 0.93829 0.94922 0.91591 1.20828 1.29972 1.01068 1.02020 0.90827 1.25126 0.94385 0.98852 0.94386 1.69926 1.42245 1.33993 1.07198 0.86908 0.81122 0.84702 0.77147 1.19422 1.22232 1.17821 1.21698 0.92907 0.92980 0.97417 1.58791 1.14922 1.54827 1.09491 1.19808 0.92672 0.95412 1.17284 1.20095 0.99722 0.91697 1.01151 0.90854 0.91890 0.90174 0.92658 0.94059 0.96131 0.86839 0.83091 0.92562 0.93095 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.22 36.01 0.37 -0.61 16 2 C 0.06 1.05 7.21 -82.26 -0.59 0.46 16 3 N -0.50 -8.89 7.36 33.48 0.25 -8.65 16 4 H 0.43 5.92 8.96 -182.61 -1.64 4.29 16 5 N -0.29 -6.67 12.70 33.67 0.43 -6.24 16 6 C 0.13 2.98 5.71 -82.41 -0.47 2.51 16 7 C 0.08 1.86 2.33 -92.92 -0.22 1.64 16 8 H 0.07 1.61 3.27 -51.93 -0.17 1.44 16 9 C -0.50 -14.06 7.82 -34.44 -0.27 -14.33 16 10 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 13 Si 0.87 21.44 27.25 -169.99 -4.63 16.81 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.25 -5.83 5.06 56.52 0.29 -5.54 16 17 C 0.08 1.78 6.23 -3.82 -0.02 1.76 16 18 N -0.85 -17.23 9.66 -10.37 -0.10 -17.33 16 19 C -0.24 -4.85 6.10 -105.05 -0.64 -5.49 16 20 C -0.07 -1.21 9.07 36.00 0.33 -0.88 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.32 5.42 9.08 -39.29 -0.36 5.07 16 28 H 0.35 7.78 7.97 -39.29 -0.31 7.46 16 29 H 0.06 1.00 8.08 -51.93 -0.42 0.59 16 30 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 31 H 0.06 1.16 6.78 -51.93 -0.35 0.80 16 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -32.58 257.71 -6.37 -38.96 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.35 Total: 11.99 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.62 Total: -12.88 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 1.35 Total: -58.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.63 Total: 16.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.58 -6.37 -38.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259531095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.910 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds