Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34943 * 126.12727 * 2 1 4 4 H 0.97003 * 126.03349 * 0.03613 * 3 2 1 5 5 N 1.40083 * 107.92724 * 179.79509 * 3 2 1 6 6 C 1.30837 * 108.20250 * 0.41382 * 5 3 2 7 7 C 1.50698 * 125.89640 * 179.85486 * 6 5 3 8 8 H 1.09004 * 109.47206 * 179.69293 * 7 6 5 9 9 C 1.50699 * 109.47406 * 59.69135 * 7 6 5 10 10 H 1.07993 * 120.00121 * 295.01823 * 9 7 6 11 11 C 1.37886 * 119.99987 * 115.01627 * 9 7 6 12 12 N 1.31510 * 119.99735 * 184.85612 * 11 9 7 13 13 Si 1.86797 * 119.99955 * 4.85436 * 11 9 7 14 14 H 1.48504 * 109.47083 * 84.69109 * 13 11 9 15 15 H 1.48497 * 109.47154 * 204.68869 * 13 11 9 16 16 H 1.48501 * 109.47031 * 324.68909 * 13 11 9 17 17 C 1.53001 * 109.47330 * 299.69047 * 7 6 5 18 18 N 1.46900 * 109.47138 * 185.46573 * 17 7 6 19 19 C 1.35322 * 126.12753 * 180.02562 * 2 1 3 20 20 C 1.50698 * 126.03802 * 359.97438 * 19 2 1 21 21 H 1.09004 * 109.46749 * 269.95201 * 1 2 3 22 22 H 1.08997 * 109.47299 * 29.95603 * 1 2 3 23 23 H 1.09007 * 109.46816 * 149.96088 * 1 2 3 24 24 H 0.97006 * 119.99841 * 180.02562 * 12 11 9 25 25 H 1.09000 * 109.46933 * 305.46600 * 17 7 6 26 26 H 1.08995 * 109.46974 * 65.46489 * 17 7 6 27 27 H 1.00906 * 111.00074 * 184.88233 * 18 17 7 28 28 H 1.00900 * 111.00191 * 308.83338 * 18 17 7 29 29 H 1.08999 * 109.47299 * 269.97458 * 20 19 2 30 30 H 1.08996 * 109.47718 * 29.97670 * 20 19 2 31 31 H 1.09000 * 109.47231 * 149.97685 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3026 1.0899 0.0000 4 1 2.0055 2.0133 0.0005 5 7 3.6334 0.6524 0.0048 6 6 3.6335 -0.6559 -0.0015 7 6 4.8543 -1.5394 -0.0025 8 1 4.5462 -2.5850 -0.0027 9 6 5.6784 -1.2590 1.2276 10 1 6.1404 -0.2917 1.3591 11 6 5.8426 -2.2373 2.1853 12 7 6.4807 -1.9635 3.3022 13 14 5.1587 -3.9513 1.8963 14 1 6.1350 -4.7478 1.1102 15 1 4.9168 -4.6146 3.2027 16 1 3.8807 -3.8544 1.1462 17 6 5.6896 -1.2537 -1.2521 18 7 6.8085 -2.2032 -1.3208 19 6 2.3049 -1.0930 -0.0005 20 6 1.8433 -2.5276 -0.0006 21 1 -0.3633 -0.0009 1.0277 22 1 -0.3634 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5145 24 1 6.5965 -2.6519 3.9758 25 1 5.0656 -1.3628 -2.1390 26 1 6.0786 -0.2366 -1.2043 27 1 7.4203 -1.9857 -2.0931 28 1 7.3185 -2.2246 -0.4504 29 1 1.7329 -2.8738 1.0270 30 1 0.8845 -2.6008 -0.5137 31 1 2.5789 -3.1459 -0.5152 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259531095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = 28.950459 kcal Electronic energy + Delta-G solvation = -14029.898262 eV Core-core repulsion = 11732.037768 eV Total energy + Delta-G solvation = -2297.860493 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.07454 -37.20863 -34.22511 -33.64891 -33.37980 -30.35427 -28.77909 -26.32530 -26.19678 -23.20705 -20.45035 -20.03419 -19.06602 -17.91387 -16.49669 -16.38073 -15.83179 -15.57989 -14.77132 -14.56106 -14.06586 -13.90924 -13.65254 -13.57496 -13.40040 -13.11359 -12.81146 -12.74053 -12.28164 -11.81183 -11.62626 -11.53683 -10.92508 -10.67016 -9.90904 -9.44721 -9.06809 -8.25911 -6.31572 1.12637 1.43264 1.48383 1.55712 2.01647 2.22076 2.42253 3.12992 3.84008 4.01773 4.11166 4.36084 4.47062 4.58761 4.63104 4.76713 4.92471 4.95733 5.01557 5.08776 5.12879 5.31088 5.39062 5.48777 5.64868 5.96319 6.28907 6.39647 6.70278 6.72386 6.85275 7.06092 7.35185 8.90023 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029407 B = 0.012461 C = 0.011248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.928691 B = 2246.472913 C = 2488.707021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 N -0.484 5.484 4 H 0.444 0.556 5 N -0.339 5.339 6 C 0.097 3.903 7 C 0.080 3.920 8 H 0.068 0.932 9 C -0.494 4.494 10 H 0.020 0.980 11 C 0.021 3.979 12 N -0.948 5.948 13 Si 0.936 3.064 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.229 1.229 17 C 0.090 3.910 18 N -0.846 5.846 19 C -0.276 4.276 20 C -0.067 4.067 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.265 0.735 25 H 0.059 0.941 26 H 0.002 0.998 27 H 0.342 0.658 28 H 0.343 0.657 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 0.013 -8.787 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 N -0.193 5.193 4 H 0.289 0.711 5 N -0.161 5.161 6 C -0.070 4.070 7 C 0.059 3.941 8 H 0.086 0.914 9 C -0.533 4.533 10 H 0.038 0.962 11 C -0.177 4.177 12 N -0.587 5.587 13 Si 0.760 3.240 14 H -0.185 1.185 15 H -0.224 1.224 16 H -0.152 1.152 17 C -0.042 4.042 18 N -0.376 5.376 19 C -0.287 4.287 20 C -0.125 4.125 21 H 0.106 0.894 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.780 0.456 -8.745 15.492 hybrid contribution 0.454 0.384 0.761 0.966 sum -12.326 0.840 -7.984 14.710 Atomic orbital electron populations 1.20571 0.83773 1.05381 1.04312 1.21466 0.96115 0.86605 1.00212 1.46241 1.03740 1.08650 1.60702 0.71121 1.77234 0.97288 1.13722 1.27888 1.22969 0.96657 0.91668 0.95715 1.17850 0.88184 0.94306 0.93806 0.91397 1.20834 1.30029 0.98649 1.03771 0.96166 1.25952 0.94752 1.03125 0.93837 1.70075 1.44534 1.35515 1.08580 0.85922 0.81657 0.79191 0.77222 1.18463 1.22434 1.15188 1.21554 0.93217 0.92275 0.97110 1.58773 1.15018 1.54154 1.09684 1.20191 0.91679 0.97670 1.19150 1.20126 1.01370 0.89819 1.01139 0.89361 0.89016 0.88208 0.92610 0.92246 0.97945 0.84576 0.84317 0.93213 0.89143 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.22 71.24 0.73 -0.74 16 2 C 0.09 2.64 7.21 41.41 0.30 2.94 16 3 N -0.48 -16.51 7.36 -48.00 -0.35 -16.86 16 4 H 0.44 11.36 8.96 -213.33 -1.91 9.44 16 5 N -0.34 -15.55 12.70 -47.39 -0.60 -16.15 16 6 C 0.10 4.51 5.71 43.10 0.25 4.75 16 7 C 0.08 3.88 2.33 -12.29 -0.03 3.85 16 8 H 0.07 3.25 3.27 -2.38 -0.01 3.24 16 9 C -0.49 -28.80 7.82 25.60 0.20 -28.60 16 10 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 11 C 0.02 1.23 5.47 84.66 0.46 1.70 16 12 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 13 Si 0.94 44.32 27.25 68.60 1.87 46.19 16 14 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.23 -9.81 5.06 99.48 0.50 -9.30 16 17 C 0.09 3.95 6.23 86.30 0.54 4.48 16 18 N -0.85 -33.81 9.66 -186.72 -1.80 -35.61 16 19 C -0.28 -10.53 6.10 -20.14 -0.12 -10.65 16 20 C -0.07 -2.14 9.07 71.24 0.65 -1.49 16 21 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.10 1.47 7.15 -2.38 -0.02 1.45 16 24 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.34 11.18 9.08 -89.69 -0.81 10.36 16 28 H 0.34 15.24 7.97 -89.69 -0.72 14.52 16 29 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 30 H 0.09 2.10 7.15 -2.39 -0.02 2.09 16 31 H 0.05 1.76 6.78 -2.39 -0.02 1.74 16 Total: -1.00 -73.80 257.71 -0.10 -73.90 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -2.47 Total: 31.85 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 2.97 Total: -23.77 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -2.46 Total: -128.18 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.87 Total: 46.19 kcal Total: -73.80 -0.10 -73.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259531095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.850 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds