Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30519 * 126.34491 * 60.02520 * 4 2 1 6 6 N 1.28595 * 109.67515 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67477 * 0.02562 * 6 5 4 8 8 C 1.50694 * 126.35007 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47489 * 89.97290 * 8 7 6 10 10 H 1.08005 * 119.99490 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00165 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99885 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47232 * 60.00213 * 13 11 9 15 15 H 1.48500 * 109.47170 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47096 * 299.99788 * 13 11 9 17 17 N 1.35492 * 126.35123 * 239.71151 * 4 2 1 18 18 C 1.46506 * 126.97422 * 0.04168 * 17 4 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.09007 * 109.47186 * 209.97035 * 8 7 6 27 27 H 1.08996 * 109.47179 * 329.96845 * 8 7 6 28 28 H 0.96996 * 120.00279 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.47024 * 89.99873 * 18 17 4 30 30 H 1.09005 * 109.46364 * 209.99284 * 18 17 4 31 31 H 1.08992 * 109.47224 * 329.99340 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7951 -0.3741 -2.4689 6 7 2.3800 -1.2005 -3.2617 7 6 3.0166 -2.1021 -2.5650 8 6 3.8273 -3.2474 -3.1145 9 6 5.2574 -2.8087 -3.2967 10 1 5.5499 -1.8010 -3.0406 11 6 6.1922 -3.6932 -3.7913 12 7 5.8359 -4.9201 -4.1036 13 14 7.9648 -3.1491 -4.0178 14 1 8.5253 -2.7302 -2.7080 15 1 8.7637 -4.2778 -4.5592 16 1 8.0148 -2.0072 -4.9658 17 7 2.8190 -1.8133 -1.2560 18 6 3.3455 -2.5471 -0.1024 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 3.7903 -4.0856 -2.4186 27 1 3.4163 -3.5550 -4.0760 28 1 6.4936 -5.5425 -4.4512 29 1 2.6395 -3.3258 0.1859 30 1 4.3004 -3.0020 -0.3662 31 1 3.4885 -1.8596 0.7311 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259718033.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 53.059262 kcal Electronic energy + Delta-G solvation = -13734.709016 eV Core-core repulsion = 11437.893958 eV Total energy + Delta-G solvation = -2296.815057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.33535 -35.55812 -34.41856 -33.23324 -30.46771 -27.35055 -27.11509 -26.90183 -23.47419 -22.96945 -19.96348 -19.34091 -16.64769 -16.38198 -15.46363 -14.86480 -14.62556 -14.20669 -13.20091 -13.06592 -12.82189 -12.54775 -12.23616 -12.06346 -11.66741 -11.44946 -11.18144 -10.97491 -10.92655 -10.79113 -10.62803 -10.03992 -9.67998 -9.46329 -9.42511 -8.54885 -8.08021 -6.17594 -4.22527 2.59293 3.18602 3.25949 3.30766 3.34757 3.72444 4.35832 4.60850 4.86235 5.07935 5.16754 5.18477 5.36426 5.46435 5.63008 5.65534 5.79491 5.83379 5.89320 5.89977 6.12453 6.28347 6.33529 6.66972 6.96982 7.25361 7.44747 7.65523 7.76995 8.10728 8.79538 9.42016 9.61852 10.92400 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049758 B = 0.007783 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.590320 B = 3596.882240 C = 3674.966704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.001 3.999 3 C -0.140 4.140 4 C 0.140 3.860 5 N -0.299 5.299 6 N -0.320 5.320 7 C 0.231 3.769 8 C 0.097 3.903 9 C -0.518 4.518 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.900 3.100 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.477 5.477 18 C 0.076 3.924 19 H 0.053 0.947 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 5.471 11.647 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 C -0.198 4.198 4 C -0.127 4.127 5 N -0.139 5.139 6 N -0.159 5.159 7 C -0.036 4.036 8 C 0.057 3.943 9 C -0.557 4.557 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.728 3.272 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.168 5.168 18 C -0.067 4.067 19 H 0.072 0.928 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.191 6.047 10.374 13.510 hybrid contribution 1.594 -0.575 0.978 1.957 sum -4.597 5.472 11.352 13.414 Atomic orbital electron populations 1.21772 0.93326 1.02065 1.02475 1.19401 0.96334 0.95446 0.90798 1.21785 1.01132 0.94406 1.02452 1.24423 0.99596 0.91027 0.97672 1.74023 1.20334 1.21817 0.97708 1.74239 1.12936 1.03422 1.25262 1.26051 0.98088 1.00287 0.79134 1.17887 0.92492 0.86730 0.97147 1.20854 0.91956 0.98289 1.44579 0.92549 1.24946 0.99276 0.94760 0.94873 1.69923 1.34959 1.04721 1.43275 0.86513 0.83736 0.78328 0.78659 1.20216 1.21007 1.19929 1.45988 1.38986 1.23302 1.08564 1.21991 1.01628 0.96592 0.86532 0.92832 0.91354 0.92071 0.90381 0.92069 0.92737 0.91346 0.94466 0.92621 0.92445 0.90911 0.87911 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 2 C 0.00 0.02 3.27 -91.77 -0.30 -0.28 16 3 C -0.14 -1.69 9.18 37.16 0.34 -1.35 16 4 C 0.14 2.62 6.54 -154.99 -1.01 1.61 16 5 N -0.30 -6.72 12.21 32.79 0.40 -6.32 16 6 N -0.32 -8.09 12.21 32.79 0.40 -7.69 16 7 C 0.23 5.51 7.22 -154.99 -1.12 4.39 16 8 C 0.10 2.49 5.15 -29.04 -0.15 2.34 16 9 C -0.52 -14.33 9.09 -34.44 -0.31 -14.64 16 10 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 13 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 N -0.48 -9.34 3.15 -118.00 -0.37 -9.71 16 18 C 0.08 1.11 10.58 59.85 0.63 1.74 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.86 6.89 -51.93 -0.36 0.50 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.94 7.88 -51.92 -0.41 0.53 16 27 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.63 7.83 -51.93 -0.41 1.22 16 31 H 0.08 0.89 7.18 -51.93 -0.37 0.52 16 LS Contribution 268.33 15.07 4.04 4.04 Total: -1.00 -32.13 268.33 -5.96 -38.09 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.47 Total: -4.12 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.68 Total: -5.81 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 1.17 Total: -48.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.13 -5.96 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718033.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.145 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds