Wall clock time and date at job start Mon Mar 30 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30519 * 126.34491 * 60.02520 * 4 2 1 6 6 N 1.28595 * 109.67515 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67477 * 0.02562 * 6 5 4 8 8 C 1.50694 * 126.35007 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47489 * 89.97290 * 8 7 6 10 10 H 1.08005 * 119.99490 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00165 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99885 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47232 * 60.00213 * 13 11 9 15 15 H 1.48500 * 109.47170 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47096 * 299.99788 * 13 11 9 17 17 N 1.35492 * 126.35123 * 239.71151 * 4 2 1 18 18 C 1.46506 * 126.97422 * 0.04168 * 17 4 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.09007 * 109.47186 * 209.97035 * 8 7 6 27 27 H 1.08996 * 109.47179 * 329.96845 * 8 7 6 28 28 H 0.96996 * 120.00279 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.47024 * 89.99873 * 18 17 4 30 30 H 1.09005 * 109.46364 * 209.99284 * 18 17 4 31 31 H 1.08992 * 109.47224 * 329.99340 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7951 -0.3741 -2.4689 6 7 2.3800 -1.2005 -3.2617 7 6 3.0166 -2.1021 -2.5650 8 6 3.8273 -3.2474 -3.1145 9 6 5.2574 -2.8087 -3.2967 10 1 5.5499 -1.8010 -3.0406 11 6 6.1922 -3.6932 -3.7913 12 7 5.8359 -4.9201 -4.1036 13 14 7.9648 -3.1491 -4.0178 14 1 8.5253 -2.7302 -2.7080 15 1 8.7637 -4.2778 -4.5592 16 1 8.0148 -2.0072 -4.9658 17 7 2.8190 -1.8133 -1.2560 18 6 3.3455 -2.5471 -0.1024 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 3.7903 -4.0856 -2.4186 27 1 3.4163 -3.5550 -4.0760 28 1 6.4936 -5.5425 -4.4512 29 1 2.6395 -3.3258 0.1859 30 1 4.3004 -3.0020 -0.3662 31 1 3.4885 -1.8596 0.7311 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259718033.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:32 Heat of formation + Delta-G solvation = 33.207415 kcal Electronic energy + Delta-G solvation = -13735.569856 eV Core-core repulsion = 11437.893958 eV Total energy + Delta-G solvation = -2297.675898 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.97588 -36.73928 -36.07258 -35.14939 -32.32733 -29.12528 -28.32759 -28.03515 -25.50039 -24.29044 -21.67219 -20.67937 -18.71887 -17.81164 -17.07942 -16.69181 -16.05420 -15.37212 -14.68508 -14.43157 -14.29717 -13.93498 -13.83415 -13.46524 -13.03531 -12.94373 -12.69781 -12.56898 -12.25793 -12.16698 -12.01914 -11.94797 -11.72252 -11.13410 -10.95203 -10.66838 -9.82662 -8.29133 -6.42759 1.00490 1.38472 1.41813 1.49895 1.73193 1.98650 2.38117 3.03528 3.37189 3.75076 3.94877 3.95490 4.17128 4.33171 4.39857 4.43052 4.67346 4.79437 4.82732 4.95698 5.05387 5.07696 5.11976 5.32382 5.35668 5.41114 5.48747 5.60790 5.95222 6.16573 6.63163 7.26104 7.92316 8.80912 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049758 B = 0.007783 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.590320 B = 3596.882240 C = 3674.966704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.001 4.001 3 C -0.136 4.136 4 C 0.165 3.835 5 N -0.338 5.338 6 N -0.360 5.360 7 C 0.206 3.794 8 C 0.111 3.889 9 C -0.535 4.535 10 H 0.045 0.955 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.966 3.034 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.277 1.277 17 N -0.475 5.475 18 C 0.066 3.934 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 6.293 14.320 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 C -0.194 4.194 4 C -0.104 4.104 5 N -0.177 5.177 6 N -0.199 5.199 7 C -0.062 4.062 8 C 0.072 3.928 9 C -0.574 4.574 10 H 0.063 0.937 11 C -0.181 4.181 12 N -0.558 5.558 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.203 1.203 17 N -0.165 5.165 18 C -0.075 4.075 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.118 0.882 22 H 0.132 0.868 23 H 0.119 0.881 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.856 6.862 13.071 15.882 hybrid contribution 1.413 -0.804 0.220 1.640 sum -4.443 6.058 13.291 15.267 Atomic orbital electron populations 1.21763 0.91884 1.02149 1.03419 1.19844 0.97434 0.95782 0.89138 1.21783 1.00547 0.93666 1.03448 1.25558 0.96789 0.89581 0.98428 1.73930 1.21974 1.22462 0.99333 1.74110 1.13980 1.04475 1.27322 1.25512 0.99219 1.00256 0.81255 1.17508 0.92052 0.87638 0.95633 1.21013 0.93179 0.97891 1.45275 0.93705 1.25763 1.03491 0.94672 0.94156 1.70018 1.36527 1.05686 1.43568 0.85492 0.78592 0.77927 0.79009 1.18737 1.19875 1.20296 1.46214 1.38547 1.23555 1.08219 1.22381 1.01307 0.98013 0.85781 0.93213 0.93350 0.88206 0.86840 0.88089 0.93642 0.93373 0.94470 0.95980 0.92003 0.88375 0.89632 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.18 71.98 0.66 -2.02 16 2 C 0.00 -0.03 3.27 -11.54 -0.04 -0.07 16 3 C -0.14 -2.87 9.18 71.98 0.66 -2.21 16 4 C 0.17 5.97 6.54 137.98 0.90 6.88 16 5 N -0.34 -15.41 12.21 -50.16 -0.61 -16.02 16 6 N -0.36 -18.85 12.21 -50.16 -0.61 -19.46 16 7 C 0.21 10.10 7.22 137.98 1.00 11.09 16 8 C 0.11 5.96 5.15 29.10 0.15 6.11 16 9 C -0.53 -30.33 9.09 25.60 0.23 -30.10 16 10 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 11 C 0.02 1.07 5.46 84.65 0.46 1.54 16 12 N -0.92 -53.04 13.29 21.45 0.28 -52.76 16 13 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 14 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 N -0.48 -18.19 3.15 -527.25 -1.66 -19.85 16 18 C 0.07 1.77 10.58 127.77 1.35 3.12 16 19 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.11 1.87 6.89 -2.39 -0.02 1.85 16 23 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.94 7.88 -2.38 -0.02 1.92 16 27 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.62 7.83 -2.38 -0.02 2.60 16 31 H 0.12 2.19 7.18 -2.39 -0.02 2.17 16 Total: -1.00 -72.31 268.33 5.91 -66.40 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.10 Total: 1.98 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 5.38 Total: -5.66 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -2.60 Total: -108.09 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.31 5.91 -66.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718033.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.612 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds