Wall clock time and date at job start Mon Mar 30 2020 02:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34669 * 126.59045 * 2 1 4 4 C 1.50701 * 125.99025 * 0.02938 * 3 2 1 5 5 H 1.08993 * 109.47552 * 0.02562 * 4 3 2 6 6 C 1.50702 * 109.46878 * 120.00094 * 4 3 2 7 7 H 1.08006 * 120.00374 * 0.02562 * 6 4 3 8 8 C 1.37885 * 119.99813 * 179.97438 * 6 4 3 9 9 N 1.31512 * 119.99694 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 119.99765 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47647 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46856 * 120.00507 * 10 8 6 13 13 H 1.48507 * 109.47340 * 240.00078 * 10 8 6 14 14 C 1.52997 * 109.46973 * 239.99717 * 4 3 2 15 15 N 1.46908 * 109.46938 * 65.00531 * 14 4 3 16 16 N 1.34128 * 108.01780 * 180.02562 * 3 2 1 17 17 C 1.30495 * 109.25774 * 359.72199 * 16 3 2 18 18 N 1.35045 * 108.69990 * 0.44365 * 17 16 3 19 19 C 1.46499 * 126.39849 * 179.82112 * 18 17 16 20 20 H 1.09000 * 109.47476 * 269.98653 * 1 2 3 21 21 H 1.09003 * 109.46871 * 29.98895 * 1 2 3 22 22 H 1.08999 * 109.47076 * 149.98427 * 1 2 3 23 23 H 0.97005 * 119.99602 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.46980 * 184.99541 * 14 4 3 25 25 H 1.08993 * 109.47713 * 305.00635 * 14 4 3 26 26 H 1.00895 * 110.99920 * 179.97438 * 15 14 4 27 27 H 1.00903 * 110.99613 * 303.95216 * 15 14 4 28 28 H 1.07997 * 125.65170 * 180.29145 * 17 16 3 29 29 H 1.09002 * 109.47391 * 269.69091 * 19 18 17 30 30 H 1.09001 * 109.46813 * 149.69147 * 19 18 17 31 31 H 1.09004 * 109.47041 * 29.69274 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 6 1.8586 2.5192 0.0006 5 1 0.7694 2.5583 0.0015 6 6 2.3866 3.2107 1.2311 7 1 2.9890 2.6639 1.9414 8 6 2.1016 4.5420 1.4496 9 7 1.3685 5.2080 0.5844 10 14 2.7554 5.3989 2.9751 11 1 3.5464 4.4363 3.7831 12 1 3.6222 6.5352 2.5714 13 1 1.6179 5.9070 3.7834 14 6 2.3937 3.2221 -1.2486 15 7 1.7856 2.6245 -2.4450 16 7 3.5812 0.6541 -0.0006 17 6 3.5968 -0.6508 0.0051 18 7 2.3229 -1.0990 -0.0005 19 6 1.8943 -2.4999 -0.0007 20 1 -0.3634 -0.0002 1.0276 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8898 -0.5141 23 1 1.1676 6.1444 0.7383 24 1 2.1430 4.2820 -1.2045 25 1 3.4764 3.1063 -1.2951 26 1 2.1228 3.0722 -3.2839 27 1 1.9491 1.6293 -2.4750 28 1 4.4818 -1.2697 0.0105 29 1 1.7876 -2.8471 -1.0284 30 1 0.9372 -2.5871 0.5134 31 1 2.6393 -3.1079 0.5127 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259922614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:23 Heat of formation + Delta-G solvation = 54.457048 kcal Electronic energy + Delta-G solvation = -14026.465013 eV Core-core repulsion = 11729.710568 eV Total energy + Delta-G solvation = -2296.754445 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36499 -35.24046 -33.19406 -31.99390 -31.27560 -28.49030 -26.37351 -25.30167 -23.61543 -21.44181 -19.56618 -18.46711 -16.39316 -15.91203 -15.23795 -14.75991 -14.25282 -14.06597 -13.26515 -12.87816 -12.86161 -12.52822 -12.17932 -12.08565 -11.77131 -11.63082 -10.95068 -10.62425 -10.34605 -10.17166 -9.72022 -9.11146 -8.87414 -8.66144 -8.31214 -7.47138 -7.23833 -5.86384 -3.90429 2.72097 3.34516 3.38533 3.45892 3.52364 4.07129 4.57333 4.90411 5.23129 5.25880 5.38929 5.42941 5.45912 5.74109 5.93705 6.12557 6.22271 6.48869 6.55349 7.04966 7.08792 7.16629 7.64609 7.77566 7.82610 8.03758 8.15880 8.35583 8.55015 8.63231 9.03484 9.13104 9.71956 11.18783 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.035316 B = 0.010317 C = 0.009398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.644716 B = 2713.325201 C = 2978.632667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.056 4.056 3 C 0.061 3.939 4 C 0.125 3.875 5 H 0.046 0.954 6 C -0.491 4.491 7 H 0.056 0.944 8 C 0.058 3.942 9 N -0.890 5.890 10 Si 0.892 3.108 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.070 3.930 15 N -0.851 5.851 16 N -0.479 5.479 17 C 0.151 3.849 18 N -0.471 5.471 19 C 0.079 3.921 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.259 0.741 24 H 0.104 0.896 25 H 0.003 0.997 26 H 0.317 0.683 27 H 0.318 0.682 28 H 0.192 0.808 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -12.700 -2.485 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.068 4.068 4 C 0.105 3.895 5 H 0.064 0.936 6 C -0.531 4.531 7 H 0.075 0.925 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.060 4.060 15 N -0.378 5.378 16 N -0.197 5.197 17 C -0.130 4.130 18 N -0.158 5.158 19 C -0.064 4.064 20 H 0.081 0.919 21 H 0.106 0.894 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.022 0.978 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.209 0.791 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.491 -11.893 -2.190 12.103 hybrid contribution 0.843 -0.540 0.622 1.179 sum 0.353 -12.434 -1.569 12.537 Atomic orbital electron populations 1.20095 0.87911 1.02500 1.01851 1.21026 0.94170 0.86386 1.15140 1.21408 0.87186 0.96980 1.01236 1.17288 0.96374 0.82477 0.93373 0.93590 1.21093 1.31545 0.94908 1.05528 0.92530 1.24972 0.95304 0.97424 0.96581 1.69901 1.38426 1.09451 1.35219 0.86534 0.78613 0.79485 0.83370 1.19918 1.21126 1.21178 1.22033 0.93762 1.02104 0.88100 1.59046 1.66542 1.06966 1.05238 1.70227 1.23495 1.07524 1.18470 1.24781 0.86767 0.92417 1.09028 1.45148 1.07401 1.06095 1.57195 1.21821 1.01741 0.80340 1.02522 0.91919 0.89417 0.93268 0.93145 0.87803 0.97838 0.87316 0.87135 0.79139 0.91481 0.90369 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.62 36.01 0.35 -0.74 16 2 C -0.06 -1.11 6.95 -81.60 -0.57 -1.67 16 3 C 0.06 1.43 4.57 -82.85 -0.38 1.05 16 4 C 0.12 3.30 2.34 -92.92 -0.22 3.08 16 5 H 0.05 1.30 6.82 -51.93 -0.35 0.94 16 6 C -0.49 -14.28 8.55 -34.44 -0.29 -14.57 16 7 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 8 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 9 N -0.89 -26.00 11.29 55.43 0.63 -25.37 16 10 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.07 1.80 6.07 -3.82 -0.02 1.77 16 15 N -0.85 -18.47 9.62 -10.37 -0.10 -18.57 16 16 N -0.48 -10.97 11.25 -10.87 -0.12 -11.09 16 17 C 0.15 2.69 12.56 -90.38 -1.14 1.55 16 18 N -0.47 -7.69 3.15 -121.36 -0.38 -8.07 16 19 C 0.08 0.82 10.87 59.85 0.65 1.47 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.09 1.58 7.17 -51.93 -0.37 1.21 16 22 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.10 2.94 5.95 -51.93 -0.31 2.63 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.32 6.10 9.08 -39.29 -0.36 5.74 16 27 H 0.32 6.67 8.07 -39.29 -0.32 6.36 16 28 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 262.43 15.07 3.95 3.95 Total: -1.00 -32.86 262.43 -6.94 -39.79 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.18 Total: 8.68 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.71 Total: -6.50 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.02 Total: -63.11 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.86 -6.94 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.251 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds