Wall clock time and date at job start Mon Mar 30 2020 02:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34669 * 126.59045 * 2 1 4 4 C 1.50701 * 125.99025 * 0.02938 * 3 2 1 5 5 H 1.08993 * 109.47552 * 0.02562 * 4 3 2 6 6 C 1.50702 * 109.46878 * 120.00094 * 4 3 2 7 7 H 1.08006 * 120.00374 * 0.02562 * 6 4 3 8 8 C 1.37885 * 119.99813 * 179.97438 * 6 4 3 9 9 N 1.31512 * 119.99694 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 119.99765 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47647 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46856 * 120.00507 * 10 8 6 13 13 H 1.48507 * 109.47340 * 240.00078 * 10 8 6 14 14 C 1.52997 * 109.46973 * 239.99717 * 4 3 2 15 15 N 1.46908 * 109.46938 * 65.00531 * 14 4 3 16 16 N 1.34128 * 108.01780 * 180.02562 * 3 2 1 17 17 C 1.30495 * 109.25774 * 359.72199 * 16 3 2 18 18 N 1.35045 * 108.69990 * 0.44365 * 17 16 3 19 19 C 1.46499 * 126.39849 * 179.82112 * 18 17 16 20 20 H 1.09000 * 109.47476 * 269.98653 * 1 2 3 21 21 H 1.09003 * 109.46871 * 29.98895 * 1 2 3 22 22 H 1.08999 * 109.47076 * 149.98427 * 1 2 3 23 23 H 0.97005 * 119.99602 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.46980 * 184.99541 * 14 4 3 25 25 H 1.08993 * 109.47713 * 305.00635 * 14 4 3 26 26 H 1.00895 * 110.99920 * 179.97438 * 15 14 4 27 27 H 1.00903 * 110.99613 * 303.95216 * 15 14 4 28 28 H 1.07997 * 125.65170 * 180.29145 * 17 16 3 29 29 H 1.09002 * 109.47391 * 269.69091 * 19 18 17 30 30 H 1.09001 * 109.46813 * 149.69147 * 19 18 17 31 31 H 1.09004 * 109.47041 * 29.69274 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 6 1.8586 2.5192 0.0006 5 1 0.7694 2.5583 0.0015 6 6 2.3866 3.2107 1.2311 7 1 2.9890 2.6639 1.9414 8 6 2.1016 4.5420 1.4496 9 7 1.3685 5.2080 0.5844 10 14 2.7554 5.3989 2.9751 11 1 3.5464 4.4363 3.7831 12 1 3.6222 6.5352 2.5714 13 1 1.6179 5.9070 3.7834 14 6 2.3937 3.2221 -1.2486 15 7 1.7856 2.6245 -2.4450 16 7 3.5812 0.6541 -0.0006 17 6 3.5968 -0.6508 0.0051 18 7 2.3229 -1.0990 -0.0005 19 6 1.8943 -2.4999 -0.0007 20 1 -0.3634 -0.0002 1.0276 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8898 -0.5141 23 1 1.1676 6.1444 0.7383 24 1 2.1430 4.2820 -1.2045 25 1 3.4764 3.1063 -1.2951 26 1 2.1228 3.0722 -3.2839 27 1 1.9491 1.6293 -2.4750 28 1 4.4818 -1.2697 0.0105 29 1 1.7876 -2.8471 -1.0284 30 1 0.9372 -2.5871 0.5134 31 1 2.6393 -3.1079 0.5127 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259922614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:22 Heat of formation + Delta-G solvation = 31.025853 kcal Electronic energy + Delta-G solvation = -14027.481066 eV Core-core repulsion = 11729.710568 eV Total energy + Delta-G solvation = -2297.770498 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.80492 -37.12678 -34.60490 -34.07474 -32.76467 -30.30613 -27.51178 -26.88705 -25.66031 -23.20086 -21.01344 -20.12083 -18.38016 -17.40630 -16.79623 -16.44416 -16.11354 -15.68005 -14.92296 -14.50407 -14.09866 -14.01964 -13.72282 -13.31879 -13.23340 -13.03113 -12.93900 -12.61279 -12.38986 -12.17541 -11.65237 -11.17526 -10.50488 -10.45293 -10.11385 -9.35761 -8.81642 -8.03870 -6.16713 1.31561 1.39663 1.41350 1.53798 2.15811 2.40183 2.56301 3.19506 4.00024 4.07568 4.10697 4.14693 4.45840 4.52546 4.66659 4.74359 4.81433 4.85411 5.12173 5.13801 5.18814 5.59079 5.64810 5.87347 5.91282 6.17652 6.34388 6.56035 6.66877 6.78528 6.94145 7.48541 7.52847 8.99181 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.035316 B = 0.010317 C = 0.009398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.644716 B = 2713.325201 C = 2978.632667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.050 4.050 3 C 0.014 3.986 4 C 0.130 3.870 5 H 0.019 0.981 6 C -0.512 4.512 7 H 0.035 0.965 8 C 0.013 3.987 9 N -0.912 5.912 10 Si 0.954 3.046 11 H -0.277 1.277 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.088 3.912 15 N -0.841 5.841 16 N -0.535 5.535 17 C 0.163 3.837 18 N -0.462 5.462 19 C 0.069 3.931 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.262 0.738 24 H 0.074 0.926 25 H -0.017 1.017 26 H 0.333 0.667 27 H 0.327 0.673 28 H 0.236 0.764 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -14.944 -2.332 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.164 4.164 3 C -0.114 4.114 4 C 0.110 3.890 5 H 0.037 0.963 6 C -0.551 4.551 7 H 0.054 0.946 8 C -0.185 4.185 9 N -0.552 5.552 10 Si 0.780 3.220 11 H -0.202 1.202 12 H -0.204 1.204 13 H -0.200 1.200 14 C -0.043 4.043 15 N -0.369 5.369 16 N -0.254 5.254 17 C -0.119 4.119 18 N -0.147 5.147 19 C -0.071 4.071 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.001 0.999 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.508 -14.175 -2.055 14.332 hybrid contribution 0.850 0.039 0.536 1.005 sum 0.342 -14.136 -1.519 14.221 Atomic orbital electron populations 1.20106 0.86137 1.03336 1.02382 1.21232 0.95324 0.86642 1.13208 1.20963 0.88643 0.96352 1.05471 1.16962 0.94409 0.85118 0.92497 0.96344 1.21273 1.31750 0.95581 1.06523 0.94640 1.25692 0.95469 0.97926 0.99406 1.70015 1.38955 1.09714 1.36528 0.85577 0.78268 0.78253 0.79948 1.20207 1.20386 1.19970 1.21626 0.92410 1.00507 0.89774 1.58876 1.65903 1.07491 1.04661 1.70065 1.23798 1.10581 1.20995 1.25526 0.88603 0.91390 1.06393 1.45377 1.06373 1.07707 1.55227 1.22282 1.03304 0.76894 1.04655 0.91486 0.91624 0.89310 0.92892 0.90797 0.99918 0.85579 0.86201 0.74779 0.89286 0.89138 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.96 9.62 71.24 0.69 -1.27 16 2 C -0.05 -1.92 6.95 40.95 0.28 -1.64 16 3 C 0.01 0.66 4.57 41.39 0.19 0.85 16 4 C 0.13 7.16 2.34 -12.29 -0.03 7.13 16 5 H 0.02 1.10 6.82 -2.39 -0.02 1.08 16 6 C -0.51 -30.92 8.55 25.60 0.22 -30.70 16 7 H 0.04 2.23 7.74 -2.91 -0.02 2.20 16 8 C 0.01 0.79 5.29 84.66 0.45 1.24 16 9 N -0.91 -54.71 11.29 21.45 0.24 -54.47 16 10 Si 0.95 46.44 29.54 68.60 2.03 48.47 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.09 4.68 6.07 86.30 0.52 5.21 16 15 N -0.84 -36.99 9.62 -186.71 -1.80 -38.79 16 16 N -0.54 -24.53 11.25 -188.32 -2.12 -26.64 16 17 C 0.16 5.42 12.56 180.26 2.26 7.68 16 18 N -0.46 -13.68 3.15 -537.88 -1.70 -15.37 16 19 C 0.07 1.11 10.87 127.77 1.39 2.49 16 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.06 2.38 7.17 -2.39 -0.02 2.36 16 22 H 0.09 2.06 7.87 -2.39 -0.02 2.04 16 23 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 24 H 0.07 4.37 5.95 -2.38 -0.01 4.36 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 26 H 0.33 12.81 9.08 -89.70 -0.81 11.99 16 27 H 0.33 13.70 8.07 -89.69 -0.72 12.98 16 28 H 0.24 5.30 8.06 -2.91 -0.02 5.28 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.28 7.81 -2.39 -0.02 1.26 16 31 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -74.53 262.43 2.24 -72.29 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.40 Total: 23.53 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.97 Total: -9.01 kcal Atomic # 7 Polarization: -129.91 SS G_CDS: -5.37 Total: -135.28 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.53 2.24 -72.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259922614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.321 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds