Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30495 * 125.65012 * 2 1 4 4 C 1.34130 * 109.25716 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.98941 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.01787 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.58817 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.46852 * 359.97438 * 7 6 4 9 9 C 1.50697 * 109.46570 * 239.99631 * 7 6 4 10 10 H 1.07998 * 120.00462 * 354.55559 * 9 7 6 11 11 C 1.37881 * 119.99943 * 174.55345 * 9 7 6 12 12 N 1.31518 * 119.99640 * 351.97455 * 11 9 7 13 13 Si 1.86798 * 120.00258 * 171.97873 * 11 9 7 14 14 H 1.48498 * 109.47280 * 59.99470 * 13 11 9 15 15 H 1.48500 * 109.47119 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46931 * 299.99412 * 13 11 9 17 17 C 1.52996 * 109.47078 * 119.99763 * 7 6 4 18 18 N 1.46896 * 109.47517 * 295.50372 * 17 7 6 19 19 N 1.35041 * 125.65002 * 180.30943 * 2 1 3 20 20 H 0.97003 * 126.39998 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47367 * 89.97548 * 1 2 3 22 22 H 1.09001 * 109.47335 * 209.97913 * 1 2 3 23 23 H 1.09000 * 109.47007 * 329.97813 * 1 2 3 24 24 H 1.08991 * 109.46752 * 269.99513 * 5 4 3 25 25 H 1.09004 * 109.47234 * 29.99691 * 5 4 3 26 26 H 1.09001 * 109.46987 * 149.99831 * 5 4 3 27 27 H 0.96998 * 119.99763 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.46819 * 175.50349 * 17 7 6 29 29 H 1.09007 * 109.47209 * 55.51055 * 17 7 6 30 30 H 1.00893 * 111.00127 * 174.63259 * 18 17 7 31 31 H 1.00896 * 111.00142 * 298.59024 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 4.7481 1.6017 -0.0013 6 6 3.5925 -0.6643 -0.0004 7 6 4.8276 -1.5279 -0.0014 8 1 5.7142 -0.8939 -0.0028 9 6 4.8309 -2.3982 -1.2316 10 1 3.9795 -2.3972 -1.8961 11 6 5.9208 -3.1957 -1.5090 12 7 7.0180 -3.0822 -0.7927 13 14 5.8394 -4.4373 -2.9023 14 1 5.5778 -3.7297 -4.1813 15 1 7.1313 -5.1637 -2.9942 16 1 4.7443 -5.4053 -2.6392 17 6 4.8334 -2.4109 1.2480 18 7 4.9387 -1.5656 2.4448 19 7 2.2941 -1.0973 -0.0059 20 1 1.9951 -2.0201 -0.0113 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 5.0353 1.8232 -1.0291 25 1 4.4929 2.5286 0.5125 26 1 5.5793 1.1186 0.5122 27 1 7.7849 -3.6430 -0.9881 28 1 5.6840 -3.0915 1.2080 29 1 3.9090 -2.9870 1.2902 30 1 4.8568 -2.1173 3.2855 31 1 5.7990 -1.0384 2.4405 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = 33.134718 kcal Electronic energy + Delta-G solvation = -13980.242744 eV Core-core repulsion = 11682.563694 eV Total energy + Delta-G solvation = -2297.679050 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17620 -35.28986 -32.39786 -32.30708 -31.29641 -28.89028 -28.00089 -24.65713 -23.63484 -20.88427 -19.83117 -18.67899 -16.69712 -16.12678 -14.78835 -14.58776 -14.54288 -13.61865 -13.44173 -12.65043 -12.61435 -12.35708 -12.03195 -11.80377 -11.75990 -11.42565 -11.26099 -11.04061 -10.85112 -10.25173 -9.99126 -9.46194 -9.01606 -8.86310 -8.54172 -7.72998 -6.99303 -6.19968 -4.25061 3.08305 3.21160 3.26616 3.29904 3.97471 4.05225 4.30992 5.10049 5.11061 5.58515 5.60881 5.83843 5.96180 6.09173 6.22239 6.27674 6.48263 6.51701 6.71235 6.84541 6.91398 7.06267 7.27749 7.69018 7.75305 7.78457 7.94884 8.22216 8.28972 8.36750 8.77867 9.01694 9.39832 10.86769 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.010784 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.521950 B = 2595.861649 C = 2894.518770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.159 3.841 3 N -0.490 5.490 4 C -0.041 4.041 5 C -0.051 4.051 6 C 0.076 3.924 7 C 0.113 3.887 8 H 0.059 0.941 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.072 3.928 18 N -0.854 5.854 19 N -0.558 5.558 20 H 0.411 0.589 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.319 0.681 31 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 1.365 2.963 6.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 N -0.212 5.212 4 C -0.168 4.168 5 C -0.109 4.109 6 C -0.041 4.041 7 C 0.093 3.907 8 H 0.077 0.923 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.059 4.059 18 N -0.381 5.381 19 N -0.161 5.161 20 H 0.247 0.753 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.879 2.521 2.688 7.804 hybrid contribution 0.993 -2.698 -0.583 2.933 sum -5.886 -0.177 2.106 6.254 Atomic orbital electron populations 1.19960 0.86223 1.02860 1.02355 1.22732 0.94781 0.82447 1.10382 1.69863 1.02167 1.28926 1.20242 1.20182 0.92197 0.91730 1.12676 1.19822 0.93350 0.96768 1.00965 1.21637 0.85651 0.94733 1.02049 1.17462 0.88275 0.92113 0.92820 0.92346 1.20987 1.02764 1.24336 1.07787 0.92646 1.24954 0.94921 0.97210 0.96406 1.69922 1.02862 1.39074 1.40410 0.86640 0.77320 0.81440 0.82594 1.20099 1.21131 1.20231 1.21928 0.99356 0.95267 0.89341 1.58946 1.43323 1.31304 1.04510 1.42912 1.06879 1.09098 1.57236 0.75280 0.91322 0.91745 0.90139 0.92733 0.92768 0.91617 0.92627 0.93260 0.94325 0.87086 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 36.01 0.38 -0.37 16 2 C 0.16 3.05 8.15 -155.42 -1.27 1.78 16 3 N -0.49 -10.74 11.25 -7.07 -0.08 -10.82 16 4 C -0.04 -0.93 7.09 -82.85 -0.59 -1.51 16 5 C -0.05 -1.00 10.07 36.01 0.36 -0.64 16 6 C 0.08 1.72 5.40 -81.60 -0.44 1.28 16 7 C 0.11 2.72 2.18 -92.92 -0.20 2.52 16 8 H 0.06 1.53 6.79 -51.93 -0.35 1.18 16 9 C -0.52 -13.59 8.47 -34.44 -0.29 -13.88 16 10 H 0.06 1.47 7.76 -52.49 -0.41 1.06 16 11 C 0.07 1.78 5.19 -17.82 -0.09 1.69 16 12 N -0.89 -23.89 12.09 55.43 0.67 -23.22 16 13 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C 0.07 1.58 6.04 -3.83 -0.02 1.56 16 18 N -0.85 -16.31 9.30 -10.37 -0.10 -16.40 16 19 N -0.56 -11.14 6.15 -6.54 -0.04 -11.18 16 20 H 0.41 7.29 8.96 -40.82 -0.37 6.92 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.26 7.16 -51.93 -0.37 0.89 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.05 1.20 6.75 -51.93 -0.35 0.85 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.32 5.30 9.08 -39.30 -0.36 4.95 16 31 H 0.33 6.21 9.05 -39.29 -0.36 5.86 16 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -29.60 265.46 -6.96 -36.56 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.23 Total: 13.22 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.16 Total: -7.58 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.45 Total: -61.61 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.60 -6.96 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.697 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds