Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30495 * 125.65012 * 2 1 4 4 C 1.34130 * 109.25716 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.98941 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.01787 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.58817 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.46852 * 359.97438 * 7 6 4 9 9 C 1.50697 * 109.46570 * 239.99631 * 7 6 4 10 10 H 1.07998 * 120.00462 * 354.55559 * 9 7 6 11 11 C 1.37881 * 119.99943 * 174.55345 * 9 7 6 12 12 N 1.31518 * 119.99640 * 351.97455 * 11 9 7 13 13 Si 1.86798 * 120.00258 * 171.97873 * 11 9 7 14 14 H 1.48498 * 109.47280 * 59.99470 * 13 11 9 15 15 H 1.48500 * 109.47119 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46931 * 299.99412 * 13 11 9 17 17 C 1.52996 * 109.47078 * 119.99763 * 7 6 4 18 18 N 1.46896 * 109.47517 * 295.50372 * 17 7 6 19 19 N 1.35041 * 125.65002 * 180.30943 * 2 1 3 20 20 H 0.97003 * 126.39998 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47367 * 89.97548 * 1 2 3 22 22 H 1.09001 * 109.47335 * 209.97913 * 1 2 3 23 23 H 1.09000 * 109.47007 * 329.97813 * 1 2 3 24 24 H 1.08991 * 109.46752 * 269.99513 * 5 4 3 25 25 H 1.09004 * 109.47234 * 29.99691 * 5 4 3 26 26 H 1.09001 * 109.46987 * 149.99831 * 5 4 3 27 27 H 0.96998 * 119.99763 * 180.02562 * 12 11 9 28 28 H 1.08999 * 109.46819 * 175.50349 * 17 7 6 29 29 H 1.09007 * 109.47209 * 55.51055 * 17 7 6 30 30 H 1.00893 * 111.00127 * 174.63259 * 18 17 7 31 31 H 1.00896 * 111.00142 * 298.59024 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 4.7481 1.6017 -0.0013 6 6 3.5925 -0.6643 -0.0004 7 6 4.8276 -1.5279 -0.0014 8 1 5.7142 -0.8939 -0.0028 9 6 4.8309 -2.3982 -1.2316 10 1 3.9795 -2.3972 -1.8961 11 6 5.9208 -3.1957 -1.5090 12 7 7.0180 -3.0822 -0.7927 13 14 5.8394 -4.4373 -2.9023 14 1 5.5778 -3.7297 -4.1813 15 1 7.1313 -5.1637 -2.9942 16 1 4.7443 -5.4053 -2.6392 17 6 4.8334 -2.4109 1.2480 18 7 4.9387 -1.5656 2.4448 19 7 2.2941 -1.0973 -0.0059 20 1 1.9951 -2.0201 -0.0113 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 5.0353 1.8232 -1.0291 25 1 4.4929 2.5286 0.5125 26 1 5.5793 1.1186 0.5122 27 1 7.7849 -3.6430 -0.9881 28 1 5.6840 -3.0915 1.2080 29 1 3.9090 -2.9870 1.2902 30 1 4.8568 -2.1173 3.2855 31 1 5.7990 -1.0384 2.4405 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = 12.104483 kcal Electronic energy + Delta-G solvation = -13981.154683 eV Core-core repulsion = 11682.563694 eV Total energy + Delta-G solvation = -2298.590990 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.77399 -37.08466 -34.21266 -33.94861 -32.84908 -30.39088 -29.62965 -26.45498 -25.36420 -22.57104 -21.44502 -20.32712 -18.60253 -17.78038 -16.65201 -16.25587 -16.09931 -15.32978 -15.03245 -14.19484 -13.96752 -13.86043 -13.78357 -13.41692 -13.14749 -12.94952 -12.89194 -12.79843 -12.59719 -12.09367 -11.81588 -11.39946 -10.69990 -10.52093 -10.48018 -9.37961 -8.65898 -8.17717 -6.30706 1.39032 1.40471 1.46556 1.52436 2.32375 2.42305 2.53935 3.09978 3.74551 4.00059 4.34738 4.46587 4.59344 4.70649 4.75233 4.82867 4.93053 5.03392 5.06606 5.19629 5.27568 5.35966 5.47321 5.72905 5.91086 6.05961 6.21730 6.45716 6.68010 6.84400 6.86336 7.35964 7.42362 8.86253 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.010784 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.521950 B = 2595.861649 C = 2894.518770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.173 3.827 3 N -0.521 5.521 4 C -0.059 4.059 5 C -0.049 4.049 6 C 0.050 3.950 7 C 0.121 3.879 8 H 0.029 0.971 9 C -0.534 4.534 10 H 0.047 0.953 11 C 0.026 3.974 12 N -0.909 5.909 13 Si 0.950 3.050 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.087 3.913 18 N -0.847 5.847 19 N -0.557 5.557 20 H 0.420 0.580 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.264 0.736 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.336 0.664 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 0.990 2.961 8.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 N -0.243 5.243 4 C -0.185 4.185 5 C -0.107 4.107 6 C -0.067 4.067 7 C 0.101 3.899 8 H 0.047 0.953 9 C -0.573 4.573 10 H 0.065 0.935 11 C -0.175 4.175 12 N -0.547 5.547 13 Si 0.776 3.224 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.044 4.044 18 N -0.376 5.376 19 N -0.161 5.161 20 H 0.258 0.742 21 H 0.105 0.895 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.148 0.852 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.456 2.137 2.703 9.131 hybrid contribution 1.415 -2.529 -0.561 2.952 sum -7.040 -0.392 2.142 7.369 Atomic orbital electron populations 1.20214 0.82079 1.04822 1.04137 1.23851 0.96906 0.81467 1.06773 1.69911 1.02077 1.30133 1.22210 1.20614 0.93258 0.92203 1.12468 1.19831 0.92633 0.97048 1.01158 1.21387 0.86243 0.94717 1.04380 1.17201 0.88084 0.91675 0.92952 0.95319 1.21213 1.02556 1.24920 1.08580 0.93465 1.25621 0.94609 0.98670 0.98554 1.70022 1.03273 1.39704 1.41685 0.85729 0.77522 0.79410 0.79732 1.20287 1.20810 1.19296 1.21602 0.98235 0.94643 0.89894 1.58843 1.43513 1.30921 1.04308 1.42916 1.06126 1.09924 1.57095 0.74208 0.89497 0.88957 0.89016 0.92688 0.91274 0.91943 0.92645 0.95876 0.94058 0.85197 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.27 10.51 71.24 0.75 -0.52 16 2 C 0.17 6.29 8.15 138.13 1.13 7.42 16 3 N -0.52 -22.18 11.25 -176.29 -1.98 -24.16 16 4 C -0.06 -2.65 7.09 41.39 0.29 -2.36 16 5 C -0.05 -1.93 10.07 71.24 0.72 -1.21 16 6 C 0.05 2.23 5.40 40.95 0.22 2.46 16 7 C 0.12 5.88 2.18 -12.29 -0.03 5.85 16 8 H 0.03 1.55 6.79 -2.39 -0.02 1.54 16 9 C -0.53 -28.12 8.47 25.60 0.22 -27.90 16 10 H 0.05 2.50 7.76 -2.91 -0.02 2.48 16 11 C 0.03 1.37 5.19 84.66 0.44 1.81 16 12 N -0.91 -49.58 12.09 21.45 0.26 -49.32 16 13 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 C 0.09 3.87 6.04 86.30 0.52 4.39 16 18 N -0.85 -31.89 9.30 -186.73 -1.74 -33.63 16 19 N -0.56 -21.45 6.15 -174.60 -1.07 -22.52 16 20 H 0.42 14.21 8.96 -92.71 -0.83 13.38 16 21 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.06 2.45 7.16 -2.39 -0.02 2.43 16 27 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.02 1.14 6.75 -2.39 -0.02 1.12 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.34 10.76 9.08 -89.70 -0.81 9.94 16 31 H 0.34 12.50 9.05 -89.70 -0.81 11.69 16 Total: -1.00 -62.66 265.46 0.45 -62.20 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -1.30 Total: 33.75 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 4.26 Total: -10.06 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -4.53 Total: -129.63 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -62.66 0.45 -62.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.305 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds