Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 C 1.50698 * 126.59327 * 180.25090 * 5 4 3 7 7 H 1.09000 * 109.46799 * 204.97746 * 6 5 4 8 8 N 1.46904 * 109.47029 * 324.97518 * 6 5 4 9 9 C 1.52999 * 109.47061 * 84.97459 * 6 5 4 10 10 C 1.50700 * 109.46993 * 174.99838 * 9 6 5 11 11 H 1.08004 * 120.00151 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00337 * 179.97438 * 10 9 6 13 13 N 1.31515 * 119.99736 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00272 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47055 * 60.00126 * 14 12 10 16 16 H 1.48501 * 109.46890 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47026 * 300.00104 * 14 12 10 18 18 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 19 19 C 1.46499 * 126.39624 * 0.02562 * 18 2 1 20 20 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 21 21 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 22 22 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 23 23 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 24 24 H 1.00899 * 110.99549 * 60.00210 * 8 6 5 25 25 H 1.00902 * 110.99498 * 183.95341 * 8 6 5 26 26 H 1.08989 * 109.47475 * 294.99990 * 9 6 5 27 27 H 1.09005 * 109.46772 * 55.00365 * 9 6 5 28 28 H 0.96996 * 119.99953 * 180.02562 * 13 12 10 29 29 H 1.09000 * 109.46815 * 269.99628 * 19 18 2 30 30 H 1.08996 * 109.47385 * 29.99737 * 19 18 2 31 31 H 1.08994 * 109.47108 * 149.99804 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 6 4.8277 -1.5275 0.0079 7 1 4.5918 -2.5012 -0.4215 8 7 5.8792 -0.8824 -0.7898 9 6 5.3175 -1.7093 1.4459 10 6 6.4778 -2.6708 1.4636 11 1 6.8308 -3.1082 0.5414 12 6 7.0894 -2.9914 2.6570 13 7 6.6598 -2.4584 3.7800 14 14 8.5280 -4.1827 2.6789 15 1 9.6310 -3.6421 1.8444 16 1 9.0034 -4.3592 4.0746 17 1 8.0929 -5.4943 2.1350 18 7 2.2942 -1.0973 0.0053 19 6 1.8427 -2.4909 0.0116 20 1 -0.3633 0.0048 1.0277 21 1 -0.3634 0.8874 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 4.4098 1.3413 -0.0058 24 1 6.1158 0.0226 -0.4117 25 1 6.6958 -1.4715 -0.8556 26 1 5.6371 -0.7469 1.8453 27 1 4.5076 -2.1059 2.0582 28 1 7.0903 -2.6837 4.6195 29 1 1.7304 -2.8318 1.0408 30 1 0.8842 -2.5647 -0.5022 31 1 2.5775 -3.1132 -0.4991 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429425.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 44.601675 kcal Electronic energy + Delta-G solvation = -13723.256805 eV Core-core repulsion = 11426.074999 eV Total energy + Delta-G solvation = -2297.181806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.65330 -35.64653 -33.60759 -32.55214 -31.01142 -28.08278 -27.07871 -26.20379 -24.05336 -21.57203 -19.72109 -18.94126 -16.97380 -16.07419 -15.51243 -14.71267 -14.62843 -13.83575 -13.52748 -13.13673 -12.93346 -12.63361 -12.41798 -12.23121 -12.13688 -12.01164 -11.61199 -11.02126 -10.80667 -10.44367 -10.01705 -9.53932 -9.20287 -9.09358 -8.52005 -7.99271 -7.47522 -6.13022 -4.19001 2.54862 3.18064 3.24327 3.30024 3.31412 3.65243 4.33960 4.80640 4.97007 5.10178 5.21398 5.28289 5.44815 5.62633 5.63127 5.70517 5.85006 5.94537 6.08484 6.40898 6.60881 6.92946 7.28579 7.38211 7.53960 7.66333 7.80411 7.96997 8.15779 8.27023 8.59028 8.87550 9.46611 10.97364 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.007661 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.889956 B = 3654.061612 C = 3783.189791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.177 3.823 3 N -0.493 5.493 4 C -0.032 4.032 5 C 0.017 3.983 6 C 0.164 3.836 7 H 0.070 0.930 8 N -0.835 5.835 9 C 0.004 3.996 10 C -0.530 4.530 11 H 0.057 0.943 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.454 5.454 19 C 0.073 3.927 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.163 0.837 24 H 0.334 0.666 25 H 0.350 0.650 26 H 0.021 0.979 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 0.114 -6.645 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 N -0.213 5.213 4 C -0.179 4.179 5 C -0.098 4.098 6 C 0.051 3.949 7 H 0.088 0.912 8 N -0.365 5.365 9 C -0.034 4.034 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.139 5.139 19 C -0.070 4.070 20 H 0.093 0.907 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.181 0.819 24 H 0.146 0.854 25 H 0.164 0.836 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.690 0.747 -7.054 12.009 hybrid contribution 1.718 -1.627 1.174 2.641 sum -7.972 -0.879 -5.880 9.945 Atomic orbital electron populations 1.20054 0.85621 1.03192 1.02917 1.23017 0.95226 0.81688 1.08476 1.70104 1.02456 1.28413 1.20290 1.21778 0.94053 0.92290 1.09741 1.21510 0.85192 0.95792 1.07351 1.19869 0.85898 0.93196 0.95915 0.91194 1.59051 1.14082 1.07730 1.55590 1.19763 0.96246 0.97566 0.89868 1.21096 1.15597 1.26851 0.93254 0.92508 1.25020 0.97280 0.96188 0.95625 1.69965 1.41253 1.43352 0.98177 0.86624 0.82648 0.81434 0.77107 1.20069 1.21248 1.20219 1.44977 1.06247 1.07248 1.55405 1.21980 1.01248 0.80132 1.03673 0.90747 0.89721 0.91427 0.81945 0.85441 0.83632 0.96053 0.96648 0.92750 0.90492 0.90080 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.19 36.01 0.37 -0.32 16 2 C 0.18 3.03 7.90 -155.42 -1.23 1.80 16 3 N -0.49 -9.78 11.25 -10.81 -0.12 -9.90 16 4 C -0.03 -0.64 11.21 -17.81 -0.20 -0.84 16 5 C 0.02 0.33 6.00 -81.60 -0.49 -0.15 16 6 C 0.16 3.38 3.06 -68.86 -0.21 3.17 16 7 H 0.07 1.43 7.09 -51.93 -0.37 1.06 16 8 N -0.84 -15.77 9.05 -5.65 -0.05 -15.83 16 9 C 0.00 0.11 4.60 -27.88 -0.13 -0.02 16 10 C -0.53 -14.08 8.55 -34.44 -0.29 -14.38 16 11 H 0.06 1.44 7.14 -52.48 -0.37 1.07 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 N -0.45 -7.90 3.15 -116.68 -0.37 -8.27 16 19 C 0.07 0.95 10.80 59.85 0.65 1.59 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 0.61 7.07 -51.93 -0.37 0.25 16 23 H 0.16 3.04 7.51 -52.49 -0.39 2.65 16 24 H 0.33 6.11 8.09 -39.29 -0.32 5.79 16 25 H 0.35 6.57 7.90 -39.29 -0.31 6.26 16 26 H 0.02 0.58 8.14 -51.94 -0.42 0.16 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.77 7.04 -51.93 -0.37 0.41 16 31 H 0.09 1.12 7.12 -51.93 -0.37 0.75 16 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -31.84 263.36 -6.61 -38.45 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.12 Total: 8.65 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.63 Total: -7.55 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.20 Total: -59.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.84 -6.61 -38.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429425.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.049 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds