Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 C 1.50698 * 126.59327 * 180.25090 * 5 4 3 7 7 H 1.09000 * 109.46799 * 204.97746 * 6 5 4 8 8 N 1.46904 * 109.47029 * 324.97518 * 6 5 4 9 9 C 1.52999 * 109.47061 * 84.97459 * 6 5 4 10 10 C 1.50700 * 109.46993 * 174.99838 * 9 6 5 11 11 H 1.08004 * 120.00151 * 0.02562 * 10 9 6 12 12 C 1.37878 * 120.00337 * 179.97438 * 10 9 6 13 13 N 1.31515 * 119.99736 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00272 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47055 * 60.00126 * 14 12 10 16 16 H 1.48501 * 109.46890 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47026 * 300.00104 * 14 12 10 18 18 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 19 19 C 1.46499 * 126.39624 * 0.02562 * 18 2 1 20 20 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 21 21 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 22 22 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 23 23 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 24 24 H 1.00899 * 110.99549 * 60.00210 * 8 6 5 25 25 H 1.00902 * 110.99498 * 183.95341 * 8 6 5 26 26 H 1.08989 * 109.47475 * 294.99990 * 9 6 5 27 27 H 1.09005 * 109.46772 * 55.00365 * 9 6 5 28 28 H 0.96996 * 119.99953 * 180.02562 * 13 12 10 29 29 H 1.09000 * 109.46815 * 269.99628 * 19 18 2 30 30 H 1.08996 * 109.47385 * 29.99737 * 19 18 2 31 31 H 1.08994 * 109.47108 * 149.99804 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 6 4.8277 -1.5275 0.0079 7 1 4.5918 -2.5012 -0.4215 8 7 5.8792 -0.8824 -0.7898 9 6 5.3175 -1.7093 1.4459 10 6 6.4778 -2.6708 1.4636 11 1 6.8308 -3.1082 0.5414 12 6 7.0894 -2.9914 2.6570 13 7 6.6598 -2.4584 3.7800 14 14 8.5280 -4.1827 2.6789 15 1 9.6310 -3.6421 1.8444 16 1 9.0034 -4.3592 4.0746 17 1 8.0929 -5.4943 2.1350 18 7 2.2942 -1.0973 0.0053 19 6 1.8427 -2.4909 0.0116 20 1 -0.3633 0.0048 1.0277 21 1 -0.3634 0.8874 -0.5180 22 1 -0.3633 -0.8925 -0.5095 23 1 4.4098 1.3413 -0.0058 24 1 6.1158 0.0226 -0.4117 25 1 6.6958 -1.4715 -0.8556 26 1 5.6371 -0.7469 1.8453 27 1 4.5076 -2.1059 2.0582 28 1 7.0903 -2.6837 4.6195 29 1 1.7304 -2.8318 1.0408 30 1 0.8842 -2.5647 -0.5022 31 1 2.5775 -3.1132 -0.4991 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429425.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 22.215656 kcal Electronic energy + Delta-G solvation = -13724.227536 eV Core-core repulsion = 11426.074999 eV Total energy + Delta-G solvation = -2298.152536 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.04374 -37.38492 -34.91159 -34.56304 -32.22088 -29.98384 -28.39886 -27.49299 -25.84288 -23.34646 -21.09628 -20.40903 -18.81086 -17.67950 -16.89198 -16.50378 -16.22918 -15.38896 -14.87654 -14.53280 -14.25398 -14.12944 -14.06162 -13.74646 -13.28852 -13.20071 -13.03581 -12.79816 -12.58771 -12.31553 -11.95668 -11.37651 -10.87261 -10.64024 -10.45207 -9.58762 -9.01076 -8.23861 -6.37782 1.14127 1.40520 1.42361 1.50353 1.92534 2.18811 2.38113 3.09190 3.64501 3.73724 3.93534 4.08021 4.28131 4.35443 4.40539 4.57305 4.68135 4.76167 4.78779 5.00693 5.09776 5.27141 5.35914 5.60862 5.70926 5.81649 6.09560 6.29845 6.39613 6.67229 6.78428 7.17153 7.33131 8.86974 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049468 B = 0.007661 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.889956 B = 3654.061612 C = 3783.189791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.186 3.814 3 N -0.529 5.529 4 C -0.048 4.048 5 C -0.010 4.010 6 C 0.182 3.818 7 H 0.074 0.926 8 N -0.824 5.824 9 C 0.018 3.982 10 C -0.538 4.538 11 H 0.070 0.930 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.264 1.264 16 H -0.289 1.289 17 H -0.266 1.266 18 N -0.458 5.458 19 C 0.064 3.936 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.163 0.837 24 H 0.337 0.663 25 H 0.351 0.649 26 H -0.012 1.012 27 H -0.017 1.017 28 H 0.263 0.737 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -1.087 -7.806 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 N -0.250 5.250 4 C -0.194 4.194 5 C -0.126 4.126 6 C 0.069 3.931 7 H 0.092 0.908 8 N -0.354 5.354 9 C -0.021 4.021 10 C -0.576 4.576 11 H 0.089 0.911 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.189 1.189 16 H -0.215 1.215 17 H -0.190 1.190 18 N -0.142 5.142 19 C -0.077 4.077 20 H 0.106 0.894 21 H 0.113 0.887 22 H 0.119 0.881 23 H 0.180 0.820 24 H 0.149 0.851 25 H 0.165 0.835 26 H 0.007 0.993 27 H 0.001 0.999 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.142 0.858 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.438 -0.469 -8.241 13.307 hybrid contribution 1.856 -1.216 1.539 2.700 sum -8.581 -1.685 -6.702 11.018 Atomic orbital electron populations 1.20324 0.81573 1.05349 1.04445 1.24103 0.97308 0.80922 1.05234 1.70109 1.02448 1.30025 1.22369 1.21955 0.94739 0.92731 1.10004 1.21359 0.86206 0.95666 1.09352 1.19512 0.86755 0.93901 0.92961 0.90772 1.59058 1.13877 1.07745 1.54681 1.19596 0.94969 0.95307 0.92261 1.21500 1.15681 1.26628 0.93766 0.91147 1.25977 1.00261 0.98048 0.95219 1.70121 1.43001 1.45208 0.98899 0.85472 0.79120 0.79252 0.77035 1.18857 1.21478 1.19042 1.45250 1.05308 1.08991 1.54627 1.22305 1.03251 0.77820 1.04342 0.89356 0.88745 0.88126 0.81968 0.85102 0.83475 0.99336 0.99907 0.92827 0.90526 0.85791 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.19 71.24 0.73 -0.44 16 2 C 0.19 6.07 7.90 138.13 1.09 7.16 16 3 N -0.53 -20.85 11.25 -188.13 -2.12 -22.97 16 4 C -0.05 -1.95 11.21 83.52 0.94 -1.01 16 5 C -0.01 -0.40 6.00 40.95 0.25 -0.15 16 6 C 0.18 7.54 3.06 44.17 0.14 7.67 16 7 H 0.07 3.00 7.09 -2.39 -0.02 2.98 16 8 N -0.82 -30.98 9.05 -171.80 -1.56 -32.54 16 9 C 0.02 0.92 4.60 29.85 0.14 1.05 16 10 C -0.54 -28.68 8.55 25.60 0.22 -28.46 16 11 H 0.07 3.49 7.14 -2.91 -0.02 3.47 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 14 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 N -0.46 -15.37 3.15 -523.06 -1.65 -17.01 16 19 C 0.06 1.53 10.80 127.77 1.38 2.91 16 20 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 21 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.10 1.34 7.07 -2.38 -0.02 1.32 16 23 H 0.16 6.32 7.51 -2.91 -0.02 6.30 16 24 H 0.34 12.47 8.09 -89.69 -0.73 11.75 16 25 H 0.35 12.94 7.90 -89.69 -0.71 12.23 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 27 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.12 1.85 7.04 -2.39 -0.02 1.84 16 31 H 0.09 2.07 7.12 -2.39 -0.02 2.05 16 Total: -1.00 -69.56 263.36 2.03 -67.53 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.29 Total: 26.63 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.33 Total: -10.61 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.04 Total: -128.12 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.56 2.03 -67.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429425.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.749 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds