Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30493 * 125.64867 * 2 1 4 4 C 1.34134 * 109.25480 * 179.97438 * 3 2 1 5 5 C 1.34669 * 108.02026 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.59177 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46764 * 155.02444 * 6 5 4 8 8 C 1.50697 * 109.47412 * 275.02829 * 6 5 4 9 9 H 1.08008 * 119.99991 * 0.02562 * 8 6 5 10 10 C 1.37869 * 120.00024 * 179.97438 * 8 6 5 11 11 N 1.31514 * 120.00440 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99885 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47170 * 90.00388 * 12 10 8 14 14 H 1.48507 * 109.46866 * 210.00315 * 12 10 8 15 15 H 1.48497 * 109.47484 * 329.99996 * 12 10 8 16 16 C 1.53003 * 109.46583 * 35.02964 * 6 5 4 17 17 N 1.46897 * 109.47196 * 65.00267 * 16 6 5 18 18 N 1.35040 * 125.64539 * 179.97438 * 2 1 3 19 19 C 1.46500 * 126.40217 * 359.97438 * 18 2 1 20 20 H 1.08994 * 109.47749 * 90.01677 * 1 2 3 21 21 H 1.09005 * 109.46981 * 210.02595 * 1 2 3 22 22 H 1.09008 * 109.46968 * 330.01837 * 1 2 3 23 23 H 1.08002 * 125.98875 * 179.74112 * 4 3 2 24 24 H 0.96997 * 120.00240 * 179.97438 * 11 10 8 25 25 H 1.09009 * 109.46476 * 184.99520 * 16 6 5 26 26 H 1.08997 * 109.47039 * 304.99303 * 16 6 5 27 27 H 1.00895 * 111.00412 * 56.04445 * 17 16 6 28 28 H 1.00904 * 110.99686 * 180.02562 * 17 16 6 29 29 H 1.09002 * 109.47095 * 90.02083 * 19 18 2 30 30 H 1.09000 * 109.47063 * 210.02524 * 19 18 2 31 31 H 1.08994 * 109.46973 * 330.02127 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6643 0.0004 6 6 4.8275 -1.5280 0.0003 7 1 4.5914 -2.4996 0.4340 8 6 5.3107 -1.7136 -1.4150 9 1 4.7770 -1.2520 -2.2328 10 6 6.4345 -2.4718 -1.6659 11 7 7.0846 -3.0336 -0.6703 12 14 7.0337 -2.7014 -3.4203 13 1 7.9915 -1.6191 -3.7618 14 1 7.7097 -4.0178 -3.5442 15 1 5.8766 -2.6498 -4.3495 16 6 5.9223 -0.8522 0.8285 17 7 5.4991 -0.7795 2.2333 18 7 2.2940 -1.0974 0.0005 19 6 1.8424 -2.4911 0.0016 20 1 -0.3634 -0.0003 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5136 23 1 4.4098 1.3410 -0.0032 24 1 7.8750 -3.5673 -0.8469 25 1 6.8427 -1.4319 0.7559 26 1 6.0960 0.1545 0.4486 27 1 5.2698 -1.6951 2.5897 28 1 6.2056 -0.3365 2.8013 29 1 1.7304 -2.8375 -1.0258 30 1 2.5771 -3.1106 0.5160 31 1 0.8839 -2.5619 0.5155 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260451814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = 49.748043 kcal Electronic energy + Delta-G solvation = -14037.971169 eV Core-core repulsion = 11741.012527 eV Total energy + Delta-G solvation = -2296.958643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18621 -35.29473 -33.19740 -32.22019 -31.17150 -28.79978 -26.37258 -25.22572 -23.65651 -21.63866 -19.20153 -18.60883 -16.57750 -16.07331 -15.02486 -14.74090 -14.44808 -13.65791 -13.38663 -12.85819 -12.74775 -12.34403 -12.13859 -11.97256 -11.83675 -11.79586 -11.20718 -11.03576 -10.79627 -10.10207 -10.01262 -9.43013 -9.00971 -8.64216 -8.53891 -7.59894 -7.07945 -6.13897 -4.23124 3.04418 3.22738 3.29776 3.34448 3.63709 4.11127 4.35371 5.12544 5.15007 5.28567 5.46425 5.63959 5.72355 5.87131 5.90849 6.02479 6.08216 6.49001 6.61848 6.85538 6.94733 7.15301 7.41958 7.75230 7.80109 7.83940 8.00680 8.16706 8.32151 8.38319 8.81302 9.03377 9.42548 10.88469 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.010743 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.854413 B = 2605.702922 C = 2956.621556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.154 3.846 3 N -0.495 5.495 4 C -0.048 4.048 5 C 0.061 3.939 6 C 0.119 3.881 7 H 0.029 0.971 8 C -0.508 4.508 9 H 0.059 0.941 10 C 0.064 3.936 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.067 3.933 17 N -0.855 5.855 18 N -0.459 5.459 19 C 0.080 3.920 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.156 0.844 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.326 0.674 28 H 0.321 0.679 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 -0.326 2.447 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 N -0.215 5.215 4 C -0.193 4.193 5 C -0.054 4.054 6 C 0.099 3.901 7 H 0.047 0.953 8 C -0.546 4.546 9 H 0.077 0.923 10 C -0.138 4.138 11 N -0.530 5.530 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.063 4.063 17 N -0.382 5.382 18 N -0.144 5.144 19 C -0.063 4.063 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.173 0.827 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.015 0.693 2.184 8.336 hybrid contribution 1.625 -1.667 -0.775 2.453 sum -6.390 -0.974 1.410 6.616 Atomic orbital electron populations 1.19956 0.86366 1.02703 1.02257 1.22797 0.94861 0.82124 1.10859 1.70004 1.02824 1.28561 1.20131 1.21619 0.93316 0.92664 1.11712 1.21952 0.84903 0.95795 1.02747 1.17339 0.85317 0.91689 0.95725 0.95316 1.21062 1.11045 1.31082 0.91461 0.92322 1.24962 0.96301 0.95133 0.97405 1.69858 1.19132 1.33382 1.30635 0.86502 0.79005 0.77504 0.84538 1.20422 1.21167 1.19869 1.21972 0.99782 0.99386 0.85195 1.58991 1.48082 1.26112 1.04999 1.44996 1.06818 1.06656 1.55912 1.21821 1.00614 0.80892 1.02968 0.91378 0.91859 0.90204 0.82675 0.92763 0.91268 0.93298 0.86339 0.86932 0.91180 0.89715 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.19 36.01 0.37 -0.39 16 2 C 0.15 3.03 7.90 -155.42 -1.23 1.80 16 3 N -0.49 -11.17 11.25 -10.82 -0.12 -11.29 16 4 C -0.05 -1.11 11.04 -17.81 -0.20 -1.31 16 5 C 0.06 1.41 5.54 -81.60 -0.45 0.96 16 6 C 0.12 2.91 2.15 -92.92 -0.20 2.71 16 7 H 0.03 0.74 7.09 -51.93 -0.37 0.37 16 8 C -0.51 -13.55 8.55 -34.44 -0.29 -13.84 16 9 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 10 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 11 N -0.89 -23.98 11.29 55.43 0.63 -23.36 16 12 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.07 1.55 5.72 -3.82 -0.02 1.53 16 17 N -0.86 -16.98 9.34 -10.37 -0.10 -17.08 16 18 N -0.46 -9.31 3.15 -116.68 -0.37 -9.67 16 19 C 0.08 1.27 10.80 59.85 0.65 1.92 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.06 0.72 7.07 -51.93 -0.37 0.35 16 22 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16 23 H 0.16 3.56 7.27 -52.49 -0.38 3.17 16 24 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.07 1.75 5.95 -51.92 -0.31 1.44 16 26 H 0.05 1.15 7.06 -51.93 -0.37 0.78 16 27 H 0.33 6.27 8.99 -39.29 -0.35 5.91 16 28 H 0.32 5.60 9.08 -39.29 -0.36 5.25 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.38 7.12 -51.93 -0.37 1.01 16 31 H 0.07 0.89 7.04 -51.93 -0.37 0.52 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -30.15 260.22 -6.58 -36.73 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.05 Total: 10.07 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.47 Total: -5.04 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.04 Total: -61.40 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.15 -6.58 -36.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds