Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30493 * 125.64867 * 2 1 4 4 C 1.34134 * 109.25480 * 179.97438 * 3 2 1 5 5 C 1.34669 * 108.02026 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.59177 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46764 * 155.02444 * 6 5 4 8 8 C 1.50697 * 109.47412 * 275.02829 * 6 5 4 9 9 H 1.08008 * 119.99991 * 0.02562 * 8 6 5 10 10 C 1.37869 * 120.00024 * 179.97438 * 8 6 5 11 11 N 1.31514 * 120.00440 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99885 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47170 * 90.00388 * 12 10 8 14 14 H 1.48507 * 109.46866 * 210.00315 * 12 10 8 15 15 H 1.48497 * 109.47484 * 329.99996 * 12 10 8 16 16 C 1.53003 * 109.46583 * 35.02964 * 6 5 4 17 17 N 1.46897 * 109.47196 * 65.00267 * 16 6 5 18 18 N 1.35040 * 125.64539 * 179.97438 * 2 1 3 19 19 C 1.46500 * 126.40217 * 359.97438 * 18 2 1 20 20 H 1.08994 * 109.47749 * 90.01677 * 1 2 3 21 21 H 1.09005 * 109.46981 * 210.02595 * 1 2 3 22 22 H 1.09008 * 109.46968 * 330.01837 * 1 2 3 23 23 H 1.08002 * 125.98875 * 179.74112 * 4 3 2 24 24 H 0.96997 * 120.00240 * 179.97438 * 11 10 8 25 25 H 1.09009 * 109.46476 * 184.99520 * 16 6 5 26 26 H 1.08997 * 109.47039 * 304.99303 * 16 6 5 27 27 H 1.00895 * 111.00412 * 56.04445 * 17 16 6 28 28 H 1.00904 * 110.99686 * 180.02562 * 17 16 6 29 29 H 1.09002 * 109.47095 * 90.02083 * 19 18 2 30 30 H 1.09000 * 109.47063 * 210.02524 * 19 18 2 31 31 H 1.08994 * 109.46973 * 330.02127 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6643 0.0004 6 6 4.8275 -1.5280 0.0003 7 1 4.5914 -2.4996 0.4340 8 6 5.3107 -1.7136 -1.4150 9 1 4.7770 -1.2520 -2.2328 10 6 6.4345 -2.4718 -1.6659 11 7 7.0846 -3.0336 -0.6703 12 14 7.0337 -2.7014 -3.4203 13 1 7.9915 -1.6191 -3.7618 14 1 7.7097 -4.0178 -3.5442 15 1 5.8766 -2.6498 -4.3495 16 6 5.9223 -0.8522 0.8285 17 7 5.4991 -0.7795 2.2333 18 7 2.2940 -1.0974 0.0005 19 6 1.8424 -2.4911 0.0016 20 1 -0.3634 -0.0003 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5136 23 1 4.4098 1.3410 -0.0032 24 1 7.8750 -3.5673 -0.8469 25 1 6.8427 -1.4319 0.7559 26 1 6.0960 0.1545 0.4486 27 1 5.2698 -1.6951 2.5897 28 1 6.2056 -0.3365 2.8013 29 1 1.7304 -2.8375 -1.0258 30 1 2.5771 -3.1106 0.5160 31 1 0.8839 -2.5619 0.5155 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = 28.854908 kcal Electronic energy + Delta-G solvation = -14038.877164 eV Core-core repulsion = 11741.012527 eV Total energy + Delta-G solvation = -2297.864637 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.80301 -37.15147 -34.72508 -34.16273 -32.65810 -30.44623 -27.82422 -26.90984 -25.50406 -23.44668 -20.81001 -20.25669 -18.56733 -17.68643 -16.68603 -16.48992 -16.14088 -15.31683 -15.09010 -14.15790 -14.09178 -14.03641 -13.94699 -13.50078 -13.26835 -12.97587 -12.93967 -12.88914 -12.59455 -11.97395 -11.88825 -11.40316 -10.78059 -10.51080 -10.22233 -9.33388 -8.79981 -8.14232 -6.32244 1.38237 1.38740 1.45096 1.52040 2.16220 2.35485 2.46971 3.08227 3.79769 4.02232 4.08583 4.18445 4.41082 4.58561 4.65855 4.69976 4.80656 4.84234 5.03775 5.09403 5.20780 5.43470 5.44758 5.79883 5.94703 6.02103 6.19165 6.50737 6.63769 6.67550 6.86608 7.34906 7.39741 8.84691 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.010743 C = 0.009468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.854413 B = 2605.702922 C = 2956.621556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.168 3.832 3 N -0.529 5.529 4 C -0.065 4.065 5 C 0.038 3.962 6 C 0.128 3.872 7 H 0.011 0.989 8 C -0.526 4.526 9 H 0.041 0.959 10 C 0.026 3.974 11 N -0.908 5.908 12 Si 0.954 3.046 13 H -0.276 1.276 14 H -0.278 1.278 15 H -0.274 1.274 16 C 0.081 3.919 17 N -0.848 5.848 18 N -0.465 5.465 19 C 0.074 3.926 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.090 0.910 23 H 0.146 0.854 24 H 0.265 0.735 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.332 0.668 28 H 0.337 0.663 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -0.866 2.355 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 N -0.249 5.249 4 C -0.210 4.210 5 C -0.077 4.077 6 C 0.108 3.892 7 H 0.029 0.971 8 C -0.565 4.565 9 H 0.059 0.941 10 C -0.174 4.174 11 N -0.547 5.547 12 Si 0.779 3.221 13 H -0.202 1.202 14 H -0.203 1.203 15 H -0.199 1.199 16 C -0.050 4.050 17 N -0.376 5.376 18 N -0.149 5.149 19 C -0.068 4.068 20 H 0.105 0.895 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.163 0.837 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.579 0.139 2.110 9.810 hybrid contribution 2.035 -1.494 -0.714 2.624 sum -7.544 -1.355 1.396 7.791 Atomic orbital electron populations 1.20231 0.81942 1.04870 1.04120 1.23956 0.97110 0.81185 1.07147 1.70005 1.02539 1.30125 1.22271 1.21617 0.93930 0.92920 1.12542 1.21678 0.85917 0.95507 1.04614 1.17105 0.86352 0.91108 0.94617 0.97112 1.21188 1.11525 1.31525 0.92223 0.94112 1.25590 0.96258 0.94784 1.00771 1.69948 1.19260 1.33456 1.32055 0.85623 0.78365 0.77660 0.80432 1.20188 1.20274 1.19927 1.21645 0.98464 0.97997 0.86874 1.58866 1.48466 1.26591 1.03677 1.45254 1.05844 1.08504 1.55258 1.22116 1.02319 0.78409 1.03938 0.89515 0.88606 0.89148 0.83657 0.92565 0.93572 0.94408 0.85685 0.85189 0.90568 0.90781 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.26 10.19 71.24 0.73 -0.54 16 2 C 0.17 6.26 7.90 138.13 1.09 7.35 16 3 N -0.53 -23.55 11.25 -188.13 -2.12 -25.67 16 4 C -0.07 -3.10 11.04 83.52 0.92 -2.17 16 5 C 0.04 1.79 5.54 40.95 0.23 2.01 16 6 C 0.13 6.38 2.15 -12.29 -0.03 6.35 16 7 H 0.01 0.57 7.09 -2.39 -0.02 0.56 16 8 C -0.53 -28.60 8.55 25.60 0.22 -28.38 16 9 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 10 C 0.03 1.38 5.29 84.65 0.45 1.83 16 11 N -0.91 -49.21 11.29 21.44 0.24 -48.96 16 12 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 13 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 C 0.08 3.85 5.72 86.30 0.49 4.34 16 17 N -0.85 -33.66 9.34 -186.71 -1.74 -35.40 16 18 N -0.46 -18.19 3.15 -523.06 -1.65 -19.84 16 19 C 0.07 2.17 10.80 127.77 1.38 3.55 16 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.10 1.67 7.07 -2.38 -0.02 1.65 16 22 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 23 H 0.15 6.94 7.27 -2.91 -0.02 6.92 16 24 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 25 H 0.05 2.39 5.95 -2.38 -0.01 2.38 16 26 H 0.04 1.84 7.06 -2.39 -0.02 1.82 16 27 H 0.33 12.67 8.99 -89.70 -0.81 11.86 16 28 H 0.34 11.59 9.08 -89.69 -0.81 10.78 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.34 7.12 -2.39 -0.02 2.32 16 31 H 0.12 2.36 7.04 -2.39 -0.02 2.34 16 Total: -1.00 -65.20 260.22 1.77 -63.43 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.47 Total: 27.50 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.48 Total: -5.65 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -5.27 Total: -129.87 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -65.20 1.77 -63.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.287 kcal (2) G-P(sol) polarization free energy of solvation -65.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds