Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34939 * 126.13107 * 2 1 4 4 H 0.97006 * 126.03490 * 359.96310 * 3 2 1 5 5 N 1.40087 * 107.93005 * 179.97438 * 3 2 1 6 6 C 1.30839 * 108.20037 * 0.02562 * 5 3 2 7 7 C 1.50702 * 125.89375 * 179.97438 * 6 5 3 8 8 H 1.09000 * 109.46847 * 165.00127 * 7 6 5 9 9 N 1.46894 * 109.46996 * 45.00210 * 7 6 5 10 10 C 1.52994 * 109.47216 * 284.99998 * 7 6 5 11 11 C 1.50704 * 109.47390 * 185.00085 * 10 7 6 12 12 H 1.08000 * 119.99662 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00172 * 180.02562 * 11 10 7 14 14 N 1.31517 * 119.99686 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99996 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47155 * 90.00081 * 15 13 11 17 17 H 1.48505 * 109.46733 * 209.99938 * 15 13 11 18 18 H 1.48500 * 109.46981 * 329.99757 * 15 13 11 19 19 C 1.35315 * 126.12312 * 179.97438 * 2 1 3 20 20 C 1.50695 * 126.04388 * 359.75313 * 19 2 1 21 21 H 1.09001 * 109.47414 * 270.02381 * 1 2 3 22 22 H 1.09002 * 109.47392 * 30.02504 * 1 2 3 23 23 H 1.09000 * 109.47238 * 150.02427 * 1 2 3 24 24 H 1.00906 * 111.00049 * 176.04556 * 9 7 6 25 25 H 1.00897 * 111.00434 * 299.99864 * 9 7 6 26 26 H 1.08998 * 109.47246 * 305.00403 * 10 7 6 27 27 H 1.09003 * 109.47051 * 65.00312 * 10 7 6 28 28 H 0.96996 * 119.99759 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.47656 * 90.02815 * 20 19 2 30 30 H 1.09004 * 109.47733 * 210.02888 * 20 19 2 31 31 H 1.09002 * 109.47315 * 330.03068 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3026 1.0899 0.0000 4 1 2.0055 2.0133 -0.0005 5 7 3.6334 0.6523 0.0006 6 6 3.6334 -0.6561 0.0004 7 6 4.8542 -1.5396 0.0003 8 1 4.5665 -2.5568 0.2661 9 7 5.8249 -1.0336 0.9798 10 6 5.4863 -1.5360 -1.3929 11 6 6.6332 -2.5131 -1.4269 12 1 6.8856 -3.0803 -0.5432 13 6 7.3601 -2.6829 -2.5861 14 7 8.3606 -3.5360 -2.6157 15 14 6.9239 -1.7014 -4.1143 16 1 7.6854 -0.4266 -4.1180 17 1 7.2714 -2.4891 -5.3244 18 1 5.4681 -1.4084 -4.1156 19 6 2.3047 -1.0930 0.0005 20 6 1.8432 -2.5275 0.0064 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 6.6249 -1.6451 1.0452 25 1 6.1075 -0.0914 0.7553 26 1 4.7394 -1.8267 -2.1316 27 1 5.8542 -0.5359 -1.6224 28 1 8.8718 -3.6558 -3.4313 29 1 1.7288 -2.8767 -1.0198 30 1 2.5806 -3.1445 0.5199 31 1 0.8862 -2.5993 0.5233 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260503268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = 51.634250 kcal Electronic energy + Delta-G solvation = -13680.617782 eV Core-core repulsion = 11383.740932 eV Total energy + Delta-G solvation = -2296.876850 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97968 -35.69792 -32.64239 -32.48506 -31.33854 -28.49686 -27.97712 -25.30969 -24.70984 -21.37602 -19.19219 -18.70184 -17.14850 -16.70324 -14.94798 -14.81931 -14.16752 -13.94877 -13.40275 -13.10671 -12.75725 -12.54684 -12.40352 -12.27653 -12.12339 -12.01161 -11.46762 -10.98227 -10.54484 -10.34267 -10.01222 -9.82208 -9.23853 -8.88893 -8.57217 -7.99656 -7.72260 -6.08135 -4.07012 2.17712 3.17504 3.18317 3.30062 3.37338 3.43473 4.43547 4.80474 5.07228 5.13493 5.25447 5.40033 5.49642 5.66028 5.74845 5.83592 6.04752 6.09405 6.30170 6.48385 6.52697 6.57751 7.02190 7.16555 7.29379 7.62046 7.73240 7.98774 8.18480 8.33463 8.47468 8.94615 9.54672 11.04496 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.039565 B = 0.008558 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.531934 B = 3271.109068 C = 3379.852651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.069 3.931 3 N -0.487 5.487 4 H 0.431 0.569 5 N -0.289 5.289 6 C 0.112 3.888 7 C 0.177 3.823 8 H 0.091 0.909 9 N -0.838 5.838 10 C -0.035 4.035 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.267 1.267 19 C -0.231 4.231 20 C -0.073 4.073 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.351 0.649 25 H 0.335 0.665 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 6.256 4.207 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 N -0.195 5.195 4 H 0.274 0.726 5 N -0.111 5.111 6 C -0.056 4.056 7 C 0.063 3.937 8 H 0.108 0.892 9 N -0.367 5.367 10 C -0.075 4.075 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.243 4.243 20 C -0.131 4.131 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.165 0.835 25 H 0.146 0.854 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.783 7.110 4.639 17.047 hybrid contribution -0.108 0.444 -1.834 1.890 sum -14.892 7.554 2.805 16.932 Atomic orbital electron populations 1.20377 0.87825 1.03461 1.02873 1.20745 0.94019 0.87811 1.03307 1.46160 1.04512 1.07585 1.61214 0.72620 1.77286 0.95328 1.12930 1.25555 1.22541 0.95515 0.91274 0.96254 1.19813 0.86448 0.94452 0.92951 0.89154 1.59113 1.19487 1.07370 1.50748 1.20272 0.96658 0.97357 0.93231 1.21034 1.12980 1.22780 0.99235 0.90604 1.24965 0.94575 0.94848 0.98664 1.69907 1.20080 1.35595 1.28198 0.86803 0.79501 0.80259 0.82896 1.20371 1.21344 1.19119 1.19767 0.91993 0.95969 1.16589 1.20069 1.00381 0.91050 1.01550 0.90595 0.91556 0.89814 0.83475 0.85361 0.96252 0.96711 0.92680 0.92134 0.91397 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.04 36.00 0.36 -0.42 16 2 C 0.07 0.98 7.21 -82.27 -0.59 0.38 16 3 N -0.49 -7.27 7.36 33.47 0.25 -7.02 16 4 H 0.43 4.78 8.96 -182.60 -1.64 3.14 16 5 N -0.29 -5.58 12.55 33.67 0.42 -5.16 16 6 C 0.11 2.22 6.05 -82.40 -0.50 1.72 16 7 C 0.18 3.76 3.16 -68.87 -0.22 3.55 16 8 H 0.09 1.91 6.92 -51.93 -0.36 1.55 16 9 N -0.84 -17.01 9.18 -5.66 -0.05 -17.06 16 10 C -0.04 -0.87 3.67 -27.88 -0.10 -0.97 16 11 C -0.52 -14.58 9.10 -34.44 -0.31 -14.90 16 12 H 0.08 2.22 7.39 -52.49 -0.39 1.83 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 15 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 19 C -0.23 -3.90 6.10 -105.06 -0.64 -4.55 16 20 C -0.07 -1.02 9.74 36.00 0.35 -0.67 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.70 7.78 -51.93 -0.40 0.29 16 24 H 0.35 7.22 7.90 -39.29 -0.31 6.91 16 25 H 0.34 6.78 8.86 -39.29 -0.35 6.43 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 27 H 0.01 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.99 7.10 -51.93 -0.37 0.62 16 31 H 0.05 0.62 7.78 -51.93 -0.40 0.22 16 LS Contribution 262.02 15.07 3.95 3.95 Total: -1.00 -32.45 262.02 -6.50 -38.95 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.42 Total: 9.34 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.75 Total: -13.89 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 1.39 Total: -55.91 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.45 -6.50 -38.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260503268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.588 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds