Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47210 * 2 1 4 4 N 1.46505 * 109.46586 * 119.99569 * 2 1 3 5 5 C 1.34945 * 126.03661 * 275.26144 * 4 2 1 6 6 C 1.35313 * 107.74555 * 180.14956 * 5 4 2 7 7 C 1.50703 * 126.04126 * 179.87199 * 6 5 4 8 8 H 1.09002 * 109.47152 * 339.71352 * 7 6 5 9 9 N 1.46896 * 109.46997 * 219.71290 * 7 6 5 10 10 C 1.50701 * 109.47064 * 99.71259 * 7 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.39870 * 107.91908 * 359.61163 * 6 5 4 19 19 N 1.30833 * 108.20352 * 0.23521 * 18 6 5 20 20 H 1.08998 * 109.47218 * 300.00903 * 1 2 3 21 21 H 1.09006 * 109.46461 * 60.00434 * 1 2 3 22 22 H 1.08999 * 109.47671 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47218 * 239.99097 * 2 1 3 24 24 H 1.08999 * 109.47159 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47054 * 299.99203 * 3 2 1 26 26 H 1.08998 * 109.47767 * 59.99434 * 3 2 1 27 27 H 1.08000 * 126.12663 * 359.97438 * 5 4 2 28 28 H 1.00907 * 110.99811 * 176.04301 * 9 7 6 29 29 H 1.00900 * 111.00550 * 300.00040 * 9 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08007 * 125.89864 * 180.23022 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1885 -0.1404 2.4167 6 6 2.6565 -1.1049 3.2423 7 6 2.9922 -0.9366 4.7018 8 1 3.1513 0.1197 4.9186 9 7 4.2143 -1.6898 5.0131 10 6 1.8542 -1.4560 5.5421 11 1 0.9759 -1.8672 5.0669 12 6 1.9348 -1.4072 6.9177 13 7 3.0046 -0.9068 7.4963 14 14 0.5245 -2.0516 7.9593 15 1 -0.5538 -2.5591 7.0733 16 1 1.0128 -3.1546 8.8257 17 1 -0.0065 -0.9541 8.8072 18 6 2.7679 -2.2871 2.5033 19 7 2.3855 -2.0400 1.2767 20 1 -0.3633 0.5140 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5140 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.9897 0.8866 2.6855 28 1 4.4967 -1.5413 5.9704 29 1 4.0923 -2.6727 4.8204 30 1 3.0611 -0.8722 8.4641 31 1 3.1106 -3.2396 2.8800 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118674.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = 65.729609 kcal Electronic energy + Delta-G solvation = -13691.708802 eV Core-core repulsion = 11395.443172 eV Total energy + Delta-G solvation = -2296.265630 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45054 -35.70140 -34.26217 -31.25263 -29.58464 -28.51003 -27.28507 -25.68976 -22.82673 -21.71982 -19.36308 -19.16060 -16.48224 -16.10470 -14.89050 -14.70126 -14.23717 -14.04671 -13.43889 -12.92646 -12.66382 -12.47261 -12.25429 -12.01110 -11.46447 -11.31008 -11.22672 -11.08231 -10.84105 -10.74781 -10.19253 -9.91918 -9.37277 -8.61889 -8.56301 -7.49594 -7.01335 -5.98349 -4.15111 2.66932 3.10026 3.25361 3.34054 3.39101 3.83107 4.41367 4.67693 4.96815 5.11305 5.21941 5.43355 5.45934 5.60459 5.67581 5.77278 5.87139 6.09594 6.16176 6.50778 6.64850 6.71323 7.05539 7.45228 7.80725 7.83898 7.84865 8.25321 8.52975 8.80930 9.07441 9.25045 9.56919 10.97394 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.041206 B = 0.008241 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.349313 B = 3397.004418 C = 3614.038454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 C -0.163 4.163 4 N -0.382 5.382 5 C 0.027 3.973 6 C -0.167 4.167 7 C 0.275 3.725 8 H 0.040 0.960 9 N -0.849 5.849 10 C -0.536 4.536 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.057 3.943 19 N -0.320 5.320 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.160 0.840 28 H 0.353 0.647 29 H 0.310 0.690 30 H 0.263 0.737 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 3.070 -11.180 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 C -0.221 4.221 4 N -0.167 5.167 5 C -0.116 4.116 6 C -0.179 4.179 7 C 0.163 3.837 8 H 0.058 0.942 9 N -0.378 5.378 10 C -0.576 4.576 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.129 4.129 19 N -0.141 5.141 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.569 3.179 -12.841 13.476 hybrid contribution -1.397 -0.464 2.284 2.717 sum -3.965 2.715 -10.557 11.599 Atomic orbital electron populations 1.22242 0.94491 1.02982 1.02524 1.20994 0.94230 0.92494 0.86409 1.22165 1.02273 0.94533 1.03119 1.48478 1.52954 1.07456 1.07859 1.22011 1.04588 0.99681 0.85325 1.20654 1.06567 0.91925 0.98704 1.17297 0.87492 0.94998 0.83866 0.94245 1.59436 1.35355 1.11858 1.31133 1.21978 1.03973 1.40472 0.91155 0.92800 1.25025 0.95957 0.94893 0.97958 1.69757 1.27765 1.45921 1.10212 0.86528 0.82589 0.78584 0.80217 1.19876 1.21022 1.21016 1.23561 0.99292 0.99580 0.90438 1.77122 1.22492 0.93434 1.21099 0.91876 0.91225 0.91890 0.88897 0.91601 0.90707 0.91461 0.82257 0.83111 0.88155 0.92701 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.52 37.16 0.35 -1.57 16 2 C 0.16 2.13 3.93 -67.93 -0.27 1.86 16 3 C -0.16 -1.73 8.84 37.15 0.33 -1.40 16 4 N -0.38 -6.88 3.52 -54.86 -0.19 -7.07 16 5 C 0.03 0.54 10.50 -17.23 -0.18 0.36 16 6 C -0.17 -3.76 5.03 -105.05 -0.53 -4.29 16 7 C 0.27 6.95 3.15 -70.02 -0.22 6.73 16 8 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 9 N -0.85 -20.62 9.10 -6.65 -0.06 -20.68 16 10 C -0.54 -14.61 8.71 -34.44 -0.30 -14.91 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.72 5.38 -17.82 -0.10 1.62 16 13 N -0.90 -24.94 11.54 55.43 0.64 -24.30 16 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.06 1.21 11.40 -17.37 -0.20 1.01 16 19 N -0.32 -6.51 12.58 30.63 0.39 -6.12 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.73 7.16 -51.93 -0.37 0.35 16 27 H 0.16 2.78 7.27 -52.49 -0.38 2.39 16 28 H 0.35 9.14 7.08 -39.29 -0.28 8.86 16 29 H 0.31 7.14 8.19 -39.29 -0.32 6.82 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.17 3.34 7.66 -52.48 -0.40 2.94 16 LS Contribution 264.44 15.07 3.99 3.99 Total: -1.00 -29.76 264.44 -5.63 -35.39 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.25 Total: 13.20 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.11 Total: -10.58 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.77 Total: -58.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.76 -5.63 -35.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118674.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.116 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds