Wall clock time and date at job start Mon Mar 30 2020 02:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47210 * 2 1 4 4 N 1.46505 * 109.46586 * 119.99569 * 2 1 3 5 5 C 1.34945 * 126.03661 * 275.26144 * 4 2 1 6 6 C 1.35313 * 107.74555 * 180.14956 * 5 4 2 7 7 C 1.50703 * 126.04126 * 179.87199 * 6 5 4 8 8 H 1.09002 * 109.47152 * 339.71352 * 7 6 5 9 9 N 1.46896 * 109.46997 * 219.71290 * 7 6 5 10 10 C 1.50701 * 109.47064 * 99.71259 * 7 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.39870 * 107.91908 * 359.61163 * 6 5 4 19 19 N 1.30833 * 108.20352 * 0.23521 * 18 6 5 20 20 H 1.08998 * 109.47218 * 300.00903 * 1 2 3 21 21 H 1.09006 * 109.46461 * 60.00434 * 1 2 3 22 22 H 1.08999 * 109.47671 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47218 * 239.99097 * 2 1 3 24 24 H 1.08999 * 109.47159 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47054 * 299.99203 * 3 2 1 26 26 H 1.08998 * 109.47767 * 59.99434 * 3 2 1 27 27 H 1.08000 * 126.12663 * 359.97438 * 5 4 2 28 28 H 1.00907 * 110.99811 * 176.04301 * 9 7 6 29 29 H 1.00900 * 111.00550 * 300.00040 * 9 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08007 * 125.89864 * 180.23022 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1885 -0.1404 2.4167 6 6 2.6565 -1.1049 3.2423 7 6 2.9922 -0.9366 4.7018 8 1 3.1513 0.1197 4.9186 9 7 4.2143 -1.6898 5.0131 10 6 1.8542 -1.4560 5.5421 11 1 0.9759 -1.8672 5.0669 12 6 1.9348 -1.4072 6.9177 13 7 3.0046 -0.9068 7.4963 14 14 0.5245 -2.0516 7.9593 15 1 -0.5538 -2.5591 7.0733 16 1 1.0128 -3.1546 8.8257 17 1 -0.0065 -0.9541 8.8072 18 6 2.7679 -2.2871 2.5033 19 7 2.3855 -2.0400 1.2767 20 1 -0.3633 0.5140 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5140 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.9897 0.8866 2.6855 28 1 4.4967 -1.5413 5.9704 29 1 4.0923 -2.6727 4.8204 30 1 3.0611 -0.8722 8.4641 31 1 3.1106 -3.2396 2.8800 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118674.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:25 Heat of formation + Delta-G solvation = 45.303321 kcal Electronic energy + Delta-G solvation = -13692.594552 eV Core-core repulsion = 11395.443172 eV Total energy + Delta-G solvation = -2297.151380 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.98644 -37.10931 -35.97599 -33.25173 -31.07320 -30.12098 -28.20210 -27.70219 -24.41133 -23.33797 -20.83354 -20.68870 -18.48218 -17.68149 -16.56666 -16.10758 -15.85926 -15.52958 -14.84819 -14.67852 -14.31189 -13.76383 -13.38569 -13.20609 -13.02517 -12.95451 -12.83373 -12.64099 -12.30387 -12.24854 -11.91200 -11.81879 -11.19336 -10.63547 -10.12655 -9.24232 -8.93541 -8.02803 -6.29758 1.11786 1.37358 1.40707 1.51451 1.77446 2.13089 2.44067 3.11180 3.62664 3.99231 4.10957 4.15414 4.21182 4.59738 4.66938 4.73239 4.82609 4.90197 4.94845 4.97391 5.19830 5.23579 5.27148 5.70335 5.72115 5.98811 6.18095 6.39261 6.73055 6.92953 7.06605 7.21535 7.47409 8.88814 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.041206 B = 0.008241 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.349313 B = 3397.004418 C = 3614.038454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.370 5.370 5 C 0.038 3.962 6 C -0.205 4.205 7 C 0.281 3.719 8 H 0.009 0.991 9 N -0.841 5.841 10 C -0.550 4.550 11 H 0.040 0.960 12 C 0.022 3.978 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.046 3.954 19 N -0.331 5.331 20 H 0.054 0.946 21 H 0.107 0.893 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.181 0.819 28 H 0.343 0.657 29 H 0.316 0.684 30 H 0.266 0.734 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 3.650 -12.308 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 C -0.215 4.215 4 N -0.155 5.155 5 C -0.107 4.107 6 C -0.217 4.217 7 C 0.170 3.830 8 H 0.027 0.973 9 N -0.369 5.369 10 C -0.590 4.590 11 H 0.058 0.942 12 C -0.178 4.178 13 N -0.558 5.558 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.204 1.204 17 H -0.205 1.205 18 C -0.139 4.139 19 N -0.153 5.153 20 H 0.074 0.926 21 H 0.126 0.874 22 H 0.064 0.936 23 H 0.121 0.879 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.198 0.802 28 H 0.157 0.843 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.586 3.752 -14.007 14.938 hybrid contribution -1.091 -0.581 2.533 2.819 sum -4.677 3.171 -11.473 12.790 Atomic orbital electron populations 1.22212 0.93021 1.02312 1.04038 1.21558 0.95405 0.93704 0.84704 1.22170 1.01709 0.92763 1.04841 1.48932 1.51148 1.06682 1.08711 1.22251 1.02811 1.00101 0.85584 1.20500 1.09653 0.93648 0.97857 1.17055 0.87101 0.93089 0.85743 0.97312 1.59407 1.35035 1.12299 1.30192 1.22131 1.04146 1.40835 0.91862 0.94151 1.25699 0.98140 0.95032 0.98936 1.69848 1.29023 1.46323 1.10580 0.85566 0.79693 0.78120 0.78523 1.20122 1.20379 1.20485 1.23641 0.99930 0.99682 0.90653 1.77061 1.22744 0.94926 1.20585 0.92639 0.87422 0.93631 0.87905 0.92474 0.87122 0.91616 0.80243 0.84266 0.87423 0.92439 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.52 71.98 0.69 -2.57 16 2 C 0.15 3.49 3.93 44.99 0.18 3.66 16 3 C -0.16 -2.84 8.84 71.98 0.64 -2.20 16 4 N -0.37 -12.82 3.52 -327.49 -1.15 -13.98 16 5 C 0.04 1.48 10.50 83.54 0.88 2.36 16 6 C -0.21 -9.29 5.03 -20.14 -0.10 -9.39 16 7 C 0.28 14.54 3.15 43.43 0.14 14.67 16 8 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 9 N -0.84 -41.59 9.10 -174.95 -1.59 -43.18 16 10 C -0.55 -30.36 8.71 25.60 0.22 -30.14 16 11 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 12 C 0.02 1.17 5.38 84.66 0.46 1.63 16 13 N -0.92 -51.27 11.54 21.45 0.25 -51.03 16 14 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.05 1.94 11.40 85.24 0.97 2.91 16 19 N -0.33 -13.23 12.58 -57.02 -0.72 -13.95 16 20 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.23 7.16 -2.39 -0.02 1.21 16 27 H 0.18 6.05 7.27 -2.91 -0.02 6.03 16 28 H 0.34 18.08 7.08 -89.69 -0.63 17.45 16 29 H 0.32 14.80 8.19 -89.69 -0.73 14.07 16 30 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.18 7.01 7.66 -2.91 -0.02 6.99 16 Total: -1.00 -63.41 264.44 2.63 -60.78 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.24 Total: 34.89 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.06 Total: -19.06 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -3.22 Total: -122.13 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -63.41 2.63 -60.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118674.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.080 kcal (2) G-P(sol) polarization free energy of solvation -63.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds