Wall clock time and date at job start Mon Mar 30 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.65370 * 2 1 4 4 C 1.34126 * 109.25752 * 179.77477 * 3 2 1 5 5 C 1.34667 * 108.02007 * 0.40216 * 4 3 2 6 6 C 1.50703 * 126.58901 * 179.87386 * 5 4 3 7 7 N 1.46899 * 109.47107 * 264.68461 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46950 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47092 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99873 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31504 * 120.00303 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99645 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46968 * 90.00116 * 14 12 10 16 16 H 1.48498 * 109.46738 * 209.99954 * 14 12 10 17 17 H 1.48500 * 109.46999 * 329.99875 * 14 12 10 18 18 N 1.35047 * 125.65109 * 180.02562 * 2 1 3 19 19 H 0.97002 * 126.39538 * 359.97438 * 18 2 1 20 20 H 1.08993 * 109.47284 * 269.97391 * 1 2 3 21 21 H 1.09005 * 109.46912 * 29.97735 * 1 2 3 22 22 H 1.08997 * 109.47194 * 149.96820 * 1 2 3 23 23 H 1.08004 * 125.98865 * 180.24925 * 4 3 2 24 24 H 1.09002 * 109.47152 * 144.68548 * 6 5 4 25 25 H 1.09001 * 109.46980 * 24.68649 * 6 5 4 26 26 H 1.00908 * 110.99847 * 56.05051 * 7 6 5 27 27 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 28 28 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 29 29 H 1.09005 * 109.47424 * 300.00229 * 9 8 7 30 30 H 1.09004 * 109.47266 * 59.99979 * 9 8 7 31 31 H 0.96998 * 120.00316 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 0.0050 5 6 3.5926 -0.6643 -0.0008 6 6 4.8276 -1.5279 -0.0009 7 7 5.1595 -1.9076 -1.3806 8 6 6.3613 -2.7515 -1.4198 9 6 6.6749 -3.1252 -2.8699 10 6 7.9074 -3.9914 -2.9102 11 1 8.4160 -4.2499 -1.9930 12 6 8.3859 -4.4539 -4.1177 13 7 7.7665 -4.1396 -5.2343 14 14 9.9134 -5.5282 -4.1674 15 1 9.5183 -6.9556 -4.0598 16 1 10.6315 -5.3086 -5.4485 17 1 10.8045 -5.1743 -3.0334 18 7 2.2941 -1.0974 -0.0005 19 1 1.9951 -2.0202 -0.0006 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 4.4099 1.3410 0.0100 24 1 4.6430 -2.4260 0.5887 25 1 5.6592 -0.9728 0.4332 26 1 5.2720 -1.0914 -1.9632 27 1 7.2033 -2.2045 -0.9957 28 1 6.1877 -3.6580 -0.8400 29 1 5.8330 -3.6721 -3.2945 30 1 6.8485 -2.2185 -3.4495 31 1 8.1029 -4.4653 -6.0838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379360811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:23 Heat of formation + Delta-G solvation = 39.070079 kcal Electronic energy + Delta-G solvation = -12894.013270 eV Core-core repulsion = 10596.591597 eV Total energy + Delta-G solvation = -2297.421674 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.00251 -36.12185 -33.20571 -32.40015 -31.85067 -29.77142 -27.31953 -24.72170 -23.12775 -21.01416 -20.62242 -20.37032 -17.32668 -16.35361 -15.38358 -15.19699 -14.53501 -14.12058 -13.91827 -13.80455 -13.16390 -12.73222 -12.57893 -12.45357 -12.13991 -11.93574 -11.11293 -10.94588 -10.58504 -10.07649 -9.95766 -9.91106 -9.46075 -9.19825 -8.38628 -8.24547 -7.89529 -6.02225 -4.05366 2.05572 3.14111 3.15733 3.30492 3.36742 3.39771 4.41507 4.45235 4.80731 4.95759 5.12541 5.31499 5.33797 5.34664 5.43274 5.69581 5.70103 5.83095 6.23589 6.28159 6.39031 6.79509 6.91134 7.35404 7.44357 7.68185 7.75059 7.87937 8.03591 8.12159 8.39457 9.01847 9.58722 11.09184 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.078079 B = 0.004713 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.527278 B = 5938.996714 C = 6050.289862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.197 3.803 3 N -0.492 5.492 4 C -0.027 4.027 5 C -0.005 4.005 6 C 0.128 3.872 7 N -0.691 5.691 8 C 0.065 3.935 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.554 5.554 19 H 0.419 0.581 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.167 0.833 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.341 0.659 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.015 0.985 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 5.560 10.831 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.067 4.067 3 N -0.213 5.213 4 C -0.176 4.176 5 C -0.122 4.122 6 C -0.002 4.002 7 N -0.322 5.322 8 C -0.063 4.063 9 C -0.012 4.012 10 C -0.562 4.562 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.157 5.157 19 H 0.257 0.743 20 H 0.096 0.904 21 H 0.107 0.893 22 H 0.091 0.909 23 H 0.184 0.816 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.791 5.847 10.632 16.919 hybrid contribution 1.777 -1.249 0.005 2.172 sum -10.014 4.598 10.637 15.316 Atomic orbital electron populations 1.20144 0.85047 1.04009 1.03231 1.23194 0.95485 0.81882 1.06110 1.70189 1.02171 1.28707 1.20186 1.22088 0.94745 0.92131 1.08614 1.21286 0.85579 0.95373 1.09946 1.20300 0.90725 0.96535 0.92638 1.60683 1.40373 1.23733 1.07448 1.22196 0.87378 0.94903 1.01792 1.19069 0.96589 0.96637 0.88942 1.21166 1.11064 1.31236 0.92742 0.92708 1.25004 0.97220 0.96406 0.95695 1.69968 1.40110 1.45367 0.97757 0.86577 0.83095 0.80798 0.77426 1.20635 1.21183 1.19883 1.43073 1.06330 1.09992 1.56299 0.74331 0.90435 0.89267 0.90861 0.81560 0.90693 0.93034 0.84079 0.96280 0.92301 0.95741 0.96687 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 36.01 0.38 -0.15 16 2 C 0.20 2.48 8.15 -155.41 -1.27 1.21 16 3 N -0.49 -7.49 11.25 -10.81 -0.12 -7.61 16 4 C -0.03 -0.39 11.79 -17.81 -0.21 -0.60 16 5 C -0.01 -0.07 6.75 -81.60 -0.55 -0.62 16 6 C 0.13 1.81 6.24 -4.98 -0.03 1.78 16 7 N -0.69 -12.10 6.49 -115.05 -0.75 -12.85 16 8 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 9 C 0.03 0.65 5.23 -27.89 -0.15 0.50 16 10 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 N -0.55 -6.75 6.15 -6.54 -0.04 -6.79 16 19 H 0.42 4.07 8.96 -40.82 -0.37 3.70 16 20 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.34 6.03 8.72 -39.29 -0.34 5.69 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 271.98 15.07 4.10 4.10 Total: -1.00 -32.37 271.98 -7.83 -40.20 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.48 Total: 2.70 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.26 Total: -10.10 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.17 Total: -53.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.37 -7.83 -40.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379360811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.272 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds