Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00361 * 2 1 4 4 H 1.48492 * 109.47213 * 239.99702 * 3 2 1 5 5 H 1.48501 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47212 * 119.99692 * 3 2 1 7 7 C 1.37881 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46887 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46804 * 179.72123 * 10 9 7 12 12 C 1.46900 * 110.99745 * 288.42526 * 11 10 9 13 13 C 1.53010 * 109.46738 * 170.00355 * 12 11 10 14 14 C 1.52996 * 117.49422 * 243.62243 * 13 12 11 15 15 C 1.53001 * 60.00227 * 252.51133 * 14 13 12 16 16 C 1.46901 * 110.99567 * 164.47691 * 11 10 9 17 17 C 1.52997 * 117.50097 * 6.33676 * 16 11 10 18 18 C 1.53000 * 117.49932 * 297.67792 * 16 11 10 19 19 H 0.97005 * 119.99733 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47226 * 299.99485 * 9 7 2 21 21 H 1.09003 * 109.47566 * 59.99997 * 9 7 2 22 22 H 1.09001 * 109.47228 * 299.72123 * 10 9 7 23 23 H 1.08995 * 109.46804 * 59.72018 * 10 9 7 24 24 H 1.08999 * 109.47326 * 289.99878 * 12 11 10 25 25 H 1.09002 * 109.47417 * 50.00716 * 12 11 10 26 26 H 1.08998 * 115.54785 * 29.33002 * 13 12 11 27 27 H 1.08992 * 117.50469 * 359.97438 * 14 13 12 28 28 H 1.09000 * 117.49591 * 145.02466 * 14 13 12 29 29 H 1.08992 * 117.50183 * 252.51744 * 15 14 13 30 30 H 1.09000 * 117.51750 * 107.48115 * 15 14 13 31 31 H 1.08996 * 115.54791 * 152.01411 * 16 11 10 32 32 H 1.09004 * 117.49904 * 0.02562 * 17 16 11 33 33 H 1.09000 * 117.49767 * 145.02499 * 17 16 11 34 34 H 1.08997 * 117.50317 * 214.98602 * 18 16 11 35 35 H 1.09005 * 117.49770 * 359.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5106 -4.9343 0.0073 12 6 0.8768 -5.1692 1.3115 13 6 -0.0750 -6.3628 1.2083 14 6 -1.5648 -6.1001 1.4372 15 6 -0.7476 -6.8433 2.4959 16 6 2.3903 -6.0521 -0.3595 17 6 3.8812 -5.7520 -0.5275 18 6 3.0132 -6.0318 -1.7568 19 1 -0.4850 0.8401 -0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6245 -2.5571 -0.8897 22 1 2.8685 -3.6073 -0.8919 23 1 2.8751 -3.6016 0.8880 24 1 1.6446 -5.3801 2.0559 25 1 0.3166 -4.2825 1.6083 26 1 0.1958 -7.1175 0.4700 27 1 -1.8668 -5.0772 1.6616 28 1 -2.2745 -6.6821 0.8492 29 1 -0.9197 -7.9141 2.6043 30 1 -0.5118 -6.3094 3.4164 31 1 2.1157 -7.0220 0.0550 32 1 4.2093 -4.7252 -0.3655 33 1 4.5874 -6.5248 -0.2238 34 1 3.1487 -6.9884 -2.2615 35 1 2.7698 -5.1892 -2.4042 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070650072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = 48.337665 kcal Electronic energy + Delta-G solvation = -13826.811114 eV Core-core repulsion = 11633.331656 eV Total energy + Delta-G solvation = -2193.479458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.79723 -36.73383 -33.93990 -32.49924 -29.54994 -26.01957 -24.12606 -22.20277 -22.12541 -21.37401 -20.44611 -18.71733 -16.51291 -16.22892 -15.20253 -14.79376 -14.43272 -13.92878 -13.36542 -13.02741 -12.56879 -12.23109 -11.97063 -11.43209 -11.31598 -11.00059 -10.95158 -10.75635 -10.69026 -10.45788 -10.10666 -10.06766 -9.73309 -9.60493 -9.31313 -9.10767 -8.31317 -7.51648 -5.98052 -4.00661 3.34132 3.38525 3.40797 3.93167 4.14608 4.42706 4.55768 4.94470 5.13280 5.20511 5.27582 5.29534 5.37534 5.42868 5.71411 5.79835 5.87288 5.91836 6.00658 6.06748 6.14351 6.26877 6.33156 6.37553 6.45855 6.49725 6.59286 7.00220 7.52597 7.62236 7.81555 7.92430 8.10668 8.44794 9.06384 9.62794 11.13171 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.008256 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.928095 B = 3390.637878 C = 4182.857575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.059 3.941 11 N -0.504 5.504 12 C 0.086 3.914 13 C -0.141 4.141 14 C -0.174 4.174 15 C -0.188 4.188 16 C 0.024 3.976 17 C -0.225 4.225 18 C -0.175 4.175 19 H 0.261 0.739 20 H 0.016 0.984 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.023 0.977 24 H 0.032 0.968 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -12.758 1.880 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.067 4.067 11 N -0.225 5.225 12 C -0.042 4.042 13 C -0.159 4.159 14 C -0.211 4.211 15 C -0.226 4.226 16 C -0.086 4.086 17 C -0.264 4.264 18 C -0.213 4.213 19 H 0.070 0.930 20 H 0.034 0.966 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.398 -12.583 1.539 12.754 hybrid contribution 1.111 0.867 0.532 1.506 sum 2.509 -11.716 2.070 12.159 Atomic orbital electron populations 1.69965 1.05999 1.26651 1.50514 1.24985 0.94826 0.99118 0.95302 0.86669 0.79593 0.83209 0.78584 1.20236 1.21255 1.20311 1.21156 0.92913 0.91098 1.51058 0.92905 1.19079 0.93913 0.89970 0.97767 1.22462 0.96914 0.88172 0.99173 1.61926 1.30547 1.01530 1.28506 1.21699 0.95767 0.97065 0.89632 1.22306 0.94428 1.00206 0.98999 1.22983 0.94133 1.01708 1.02237 1.22954 1.05814 0.99993 0.93808 1.22665 0.90183 0.96119 0.99670 1.23588 0.95312 1.03214 1.04280 1.23025 1.03940 1.02836 0.91477 0.92955 0.96606 0.95751 0.91691 0.95851 0.95020 0.89451 0.87893 0.88451 0.89266 0.89312 0.89025 0.87229 0.87899 0.89648 0.89219 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.79 5.03 -27.88 -0.14 0.65 16 10 C 0.06 1.27 3.55 -3.82 -0.01 1.26 16 11 N -0.50 -9.41 4.67 -226.64 -1.06 -10.47 16 12 C 0.09 1.48 5.08 -3.82 -0.02 1.46 16 13 C -0.14 -2.04 5.53 -90.61 -0.50 -2.54 16 14 C -0.17 -2.39 10.18 -26.73 -0.27 -2.66 16 15 C -0.19 -2.31 10.25 -26.73 -0.27 -2.59 16 16 C 0.02 0.37 5.65 -67.71 -0.38 -0.02 16 17 C -0.22 -3.30 9.53 -26.70 -0.25 -3.56 16 18 C -0.17 -2.54 9.97 -26.70 -0.27 -2.81 16 19 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 20 H 0.02 0.44 6.57 -51.93 -0.34 0.10 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 1.39 5.85 -51.93 -0.30 1.08 16 23 H 0.02 0.50 7.89 -51.93 -0.41 0.09 16 24 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 25 H 0.09 1.70 6.11 -51.93 -0.32 1.38 16 26 H 0.10 1.44 6.74 -51.93 -0.35 1.09 16 27 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.52 6.68 -51.93 -0.35 1.17 16 32 H 0.10 1.67 5.92 -51.93 -0.31 1.37 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.58 7.71 -51.93 -0.40 1.18 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -29.65 282.67 -9.31 -38.96 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.69 Total: 1.22 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -2.53 Total: -24.46 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.32 Total: -36.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.65 -9.31 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.294 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds