Wall clock time and date at job start Mon Mar 30 2020 02:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 110.99807 * 2 1 4 4 C 1.46897 * 110.99926 * 123.95704 * 2 1 3 5 5 C 1.52997 * 109.47156 * 170.00167 * 4 2 1 6 6 C 1.50703 * 109.47170 * 180.02562 * 5 4 2 7 7 N 1.30489 * 125.73964 * 269.97589 * 6 5 4 8 8 C 1.34244 * 109.39859 * 180.02562 * 7 6 5 9 9 C 1.34635 * 108.28071 * 359.72775 * 8 7 6 10 10 N 1.36269 * 125.74863 * 89.99575 * 6 5 4 11 11 C 1.37565 * 126.50957 * 359.97438 * 10 6 5 12 12 H 1.07999 * 120.00146 * 0.02562 * 11 10 6 13 13 C 1.38942 * 119.99728 * 179.97438 * 11 10 6 14 14 N 1.31330 * 120.00074 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46755 * 90.00029 * 15 13 11 17 17 H 1.48499 * 109.47293 * 210.00038 * 15 13 11 18 18 H 1.48504 * 109.47104 * 330.00284 * 15 13 11 19 19 H 1.08996 * 109.47430 * 296.04500 * 1 2 3 20 20 H 1.09004 * 109.47169 * 56.05059 * 1 2 3 21 21 H 1.09006 * 109.47329 * 176.04487 * 1 2 3 22 22 H 1.09007 * 109.46851 * 183.95351 * 3 2 1 23 23 H 1.09000 * 109.47543 * 303.95384 * 3 2 1 24 24 H 1.08997 * 109.47491 * 63.95752 * 3 2 1 25 25 H 1.09002 * 109.47453 * 49.99370 * 4 2 1 26 26 H 1.09007 * 109.46687 * 290.00144 * 4 2 1 27 27 H 1.08997 * 109.47150 * 59.99443 * 5 4 2 28 28 H 1.09002 * 109.46862 * 299.99443 * 5 4 2 29 29 H 1.08003 * 125.85833 * 180.02562 * 8 7 6 30 30 H 1.08001 * 126.58261 * 180.26882 * 9 8 7 31 31 H 0.96996 * 119.99749 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0443 -1.7418 2.1370 7 7 4.4895 -1.2377 3.2552 8 6 4.8902 -2.2315 4.0639 9 6 4.6827 -3.4012 3.4304 10 7 4.1502 -3.0988 2.2016 11 6 3.7871 -3.9956 1.2237 12 1 3.3718 -3.6401 0.2923 13 6 3.9557 -5.3586 1.4339 14 7 4.4612 -5.7909 2.5663 15 14 3.4633 -6.5764 0.1057 16 1 4.6199 -6.8241 -0.7921 17 1 3.0437 -7.8537 0.7362 18 1 2.3349 -6.0194 -0.6828 19 1 -0.3634 0.4512 0.9233 20 1 -0.3634 0.5739 -0.8525 21 1 -0.3634 -1.0253 -0.0709 22 1 3.0828 1.3432 -0.0709 23 1 1.5897 1.9163 -0.8524 24 1 1.7044 1.8723 0.9233 25 1 1.5088 -1.7407 1.1756 26 1 1.7974 -0.2248 2.0628 27 1 3.9908 0.0193 0.9323 28 1 3.7023 -1.4966 0.0451 29 1 5.3033 -2.1133 5.0548 30 1 4.8965 -4.3879 3.8141 31 1 4.5785 -6.7424 2.7131 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:13 Heat of formation + Delta-G solvation = 36.720286 kcal Electronic energy + Delta-G solvation = -13774.264773 eV Core-core repulsion = 11476.741204 eV Total energy + Delta-G solvation = -2297.523568 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.29473 -38.50162 -35.90994 -33.28858 -32.61526 -28.85891 -28.43343 -27.20005 -25.30777 -22.20699 -22.12605 -20.81312 -19.33738 -17.48519 -16.47877 -16.39456 -16.03786 -15.74741 -15.18685 -14.94700 -14.31165 -13.92707 -13.60313 -13.46511 -13.26819 -13.00416 -12.83502 -12.64156 -12.46405 -12.34233 -12.14758 -11.81525 -11.54140 -10.47012 -10.32467 -9.33571 -8.78679 -8.60616 -6.48267 1.30289 1.37729 1.54009 1.85321 2.11869 2.54945 2.91366 3.05041 3.25422 3.93766 4.18470 4.24035 4.34151 4.51560 4.59103 4.69501 4.76306 4.81993 4.95138 4.99679 5.01344 5.05704 5.16470 5.19386 5.51917 5.62286 6.01345 6.13997 6.33882 6.49659 6.84241 7.49517 7.76726 8.36465 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026973 B = 0.010675 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.813751 B = 2622.281727 C = 3466.775910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.021 3.979 4 C 0.080 3.920 5 C 0.005 3.995 6 C 0.084 3.916 7 N -0.534 5.534 8 C -0.112 4.112 9 C -0.084 4.084 10 N -0.278 5.278 11 C -0.362 4.362 12 H 0.121 0.879 13 C -0.002 4.002 14 N -0.871 5.871 15 Si 1.019 2.981 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.253 1.253 19 H 0.024 0.976 20 H 0.090 0.910 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.023 0.977 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 4.609 -6.357 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.127 4.127 4 C -0.049 4.049 5 C -0.035 4.035 6 C -0.173 4.173 7 N -0.255 5.255 8 C -0.264 4.264 9 C -0.226 4.226 10 N 0.057 4.943 11 C -0.490 4.490 12 H 0.139 0.861 13 C -0.208 4.208 14 N -0.503 5.503 15 Si 0.838 3.162 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.176 1.176 19 H 0.043 0.957 20 H 0.108 0.892 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.182 0.818 30 H 0.202 0.798 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.817 4.948 -6.669 10.139 hybrid contribution -0.153 -1.191 0.721 1.401 sum -5.970 3.758 -5.948 9.227 Atomic orbital electron populations 1.22434 0.86141 1.02572 1.01185 1.61988 1.09038 1.14748 1.42249 1.22498 1.01235 0.87914 1.01062 1.21819 0.94534 0.97465 0.91120 1.19503 0.94361 0.97942 0.91670 1.23363 1.13277 0.81640 0.99023 1.69778 1.19451 1.33247 1.03026 1.22215 1.13277 0.89217 1.01678 1.23725 1.09416 1.01485 0.88018 1.41941 1.35231 1.05879 1.11281 1.20499 1.43263 0.87540 0.97729 0.86130 1.26665 0.94303 0.99710 1.00103 1.69816 1.38515 1.17207 1.24782 0.84559 0.79367 0.75929 0.76326 1.18852 1.19457 1.17611 0.95726 0.89161 0.91703 0.91372 0.89271 0.95789 0.92472 0.95920 0.89814 0.90835 0.81769 0.79783 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.57 127.69 1.22 1.81 16 2 N -0.56 -16.52 5.02 -948.86 -4.76 -21.28 16 3 C 0.02 0.52 9.32 127.69 1.19 1.71 16 4 C 0.08 2.94 4.94 86.30 0.43 3.37 16 5 C 0.00 0.19 5.39 29.85 0.16 0.35 16 6 C 0.08 4.32 7.16 137.74 0.99 5.31 16 7 N -0.53 -28.38 11.24 -187.19 -2.10 -30.48 16 8 C -0.11 -5.86 11.85 83.50 0.99 -4.87 16 9 C -0.08 -4.65 10.40 83.01 0.86 -3.79 16 10 N -0.28 -15.33 2.93 -340.17 -1.00 -16.33 16 11 C -0.36 -19.03 9.92 83.96 0.83 -18.19 16 12 H 0.12 5.92 7.07 -2.91 -0.02 5.90 16 13 C 0.00 -0.09 5.48 84.94 0.47 0.37 16 14 N -0.87 -45.41 10.19 21.65 0.22 -45.19 16 15 Si 1.02 37.92 29.55 68.60 2.03 39.95 16 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 17 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 18 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 19 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 20 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 21 H 0.06 1.59 8.12 -2.38 -0.02 1.57 16 22 H 0.07 1.75 6.47 -2.38 -0.02 1.73 16 23 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 24 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 2.29 8.06 -2.39 -0.02 2.27 16 26 H 0.02 0.88 8.12 -2.38 -0.02 0.86 16 27 H 0.08 3.19 6.55 -2.39 -0.02 3.17 16 28 H 0.07 3.00 7.37 -2.39 -0.02 2.99 16 29 H 0.17 7.46 8.06 -2.91 -0.02 7.44 16 30 H 0.19 10.41 5.60 -2.91 -0.02 10.39 16 31 H 0.29 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -62.23 260.52 2.63 -59.60 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.11 Total: 27.66 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 7.14 Total: -13.92 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -7.64 Total: -113.28 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -62.23 2.63 -59.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.322 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds