Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 109.56820 * 59.72035 * 9 7 2 11 11 C 1.54527 * 109.56986 * 299.47204 * 9 7 2 12 12 C 1.45879 * 111.66991 * 162.96114 * 11 9 7 13 13 C 1.53981 * 112.67031 * 61.49161 * 12 11 9 14 14 N 1.44302 * 108.31553 * 278.59483 * 13 12 11 15 15 C 1.46890 * 111.00204 * 221.34578 * 14 13 12 16 16 C 1.53001 * 117.49884 * 124.79327 * 15 14 13 17 17 C 1.53005 * 117.49889 * 56.13505 * 15 14 13 18 18 C 1.47944 * 113.64128 * 95.39384 * 14 13 12 19 19 C 1.50534 * 109.57138 * 179.97438 * 9 7 2 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.03619 * 283.52131 * 11 9 7 22 22 H 1.08995 * 109.04055 * 42.46925 * 11 9 7 23 23 H 1.08990 * 108.83961 * 182.31908 * 12 11 9 24 24 H 1.08998 * 108.84107 * 300.77955 * 12 11 9 25 25 H 1.08997 * 109.69504 * 38.30304 * 13 12 11 26 26 H 1.08998 * 109.69466 * 158.88625 * 13 12 11 27 27 H 1.09001 * 115.55585 * 270.46526 * 15 14 13 28 28 H 1.08996 * 117.49890 * 359.97438 * 16 15 14 29 29 H 1.09004 * 117.50252 * 145.02114 * 16 15 14 30 30 H 1.08998 * 117.50091 * 214.98241 * 17 15 14 31 31 H 1.08998 * 117.49647 * 359.97438 * 17 15 14 32 32 H 1.09004 * 108.70494 * 79.13739 * 18 14 13 33 33 H 1.08994 * 108.71148 * 197.26754 * 18 14 13 34 34 H 1.08994 * 108.79105 * 332.45461 * 19 9 7 35 35 H 1.08998 * 108.78831 * 90.66963 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6237 -2.5546 -0.8951 11 6 0.3663 -2.5918 1.2583 12 6 -0.6648 -3.6144 1.1202 13 6 -0.0793 -5.0250 0.9241 14 7 0.2787 -5.1782 -0.4654 15 6 -0.0916 -6.5106 -0.9607 16 6 -0.9890 -6.5801 -2.1979 17 6 -1.5550 -6.9347 -0.8206 18 6 1.7009 -4.8841 -0.7476 19 6 2.2271 -3.6452 -0.0041 20 1 -0.4850 0.8401 -0.0004 21 1 0.9948 -2.8340 2.1153 22 1 -0.1116 -1.6272 1.4292 23 1 -1.2850 -3.6121 2.0164 24 1 -1.2888 -3.3713 0.2602 25 1 0.8070 -5.1447 1.5471 26 1 -0.8239 -5.7730 1.1962 27 1 0.6692 -7.2828 -0.8468 28 1 -1.3048 -5.6372 -2.6442 29 1 -0.8187 -7.3982 -2.8979 30 1 -1.7569 -7.9859 -0.6149 31 1 -2.2428 -6.2252 -0.3606 32 1 2.3004 -5.7474 -0.4584 33 1 1.8184 -4.7209 -1.8188 34 1 3.1530 -3.3181 -0.4770 35 1 2.4415 -3.9226 1.0279 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107226629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = 5.105893 kcal Electronic energy + Delta-G solvation = -14439.540082 eV Core-core repulsion = 12244.185954 eV Total energy + Delta-G solvation = -2195.354128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22959 -37.63060 -34.95206 -33.34449 -32.68562 -28.00704 -26.45807 -24.78192 -23.04624 -22.10971 -20.97039 -20.29752 -18.46207 -17.44763 -16.59243 -16.18687 -15.83393 -15.18090 -14.67154 -14.49710 -13.90051 -13.67358 -13.42797 -13.30788 -12.80482 -12.62406 -12.31393 -12.30891 -12.04776 -11.64554 -11.45493 -11.34692 -11.16336 -10.99914 -10.77264 -10.57696 -10.29425 -8.94357 -8.03108 -6.16987 1.41275 1.41655 1.51793 2.45671 2.92422 2.97560 3.22564 4.05965 4.10794 4.18865 4.21671 4.28178 4.44872 4.47873 4.56615 4.70478 4.81204 4.84614 4.87314 4.99417 5.07516 5.16974 5.24393 5.29694 5.39207 5.56467 5.63495 5.68632 5.75129 6.15265 6.26948 6.39754 6.48596 6.51278 6.98371 7.50193 9.00732 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.051731 B = 0.008223 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.129636 B = 3404.098491 C = 3507.360828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.061 3.939 10 H -0.002 1.002 11 C -0.104 4.104 12 C -0.096 4.096 13 C 0.078 3.922 14 N -0.536 5.536 15 C -0.005 4.005 16 C -0.167 4.167 17 C -0.163 4.163 18 C 0.080 3.920 19 C -0.103 4.103 20 H 0.258 0.742 21 H 0.021 0.979 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -12.903 -0.148 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.042 3.958 10 H 0.016 0.984 11 C -0.142 4.142 12 C -0.134 4.134 13 C -0.050 4.050 14 N -0.260 5.260 15 C -0.113 4.113 16 C -0.205 4.205 17 C -0.200 4.200 18 C -0.047 4.047 19 C -0.141 4.141 20 H 0.067 0.933 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.265 -12.445 -0.373 12.514 hybrid contribution 0.809 0.874 0.363 1.245 sum -0.456 -11.570 -0.010 11.579 Atomic orbital electron populations 1.70073 1.07123 1.26757 1.51339 1.25738 0.95644 1.02235 0.95144 0.85684 0.78809 0.79797 0.78112 1.20318 1.20951 1.19327 1.21798 0.92812 0.92671 1.50125 0.93259 1.18227 0.92746 0.91321 0.93469 0.98376 1.20419 0.97384 0.98696 0.97715 1.20395 0.98176 0.95177 0.99639 1.21733 0.99090 0.96622 0.87588 1.60309 1.20330 1.26390 1.19006 1.22570 0.94336 0.90326 1.04064 1.23090 1.03312 1.02787 0.91270 1.23098 0.94330 1.02482 1.00119 1.22211 0.86415 0.96252 0.99779 1.21416 0.98994 0.94906 0.98751 0.93311 0.96028 0.92990 0.92950 0.94414 0.94641 0.90014 0.88499 0.90391 0.86841 0.86289 0.89482 0.94053 0.92347 0.92898 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.60 11.39 21.45 0.24 -54.35 16 2 C 0.01 0.61 5.21 84.66 0.44 1.05 16 3 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -30.59 8.44 25.60 0.22 -30.38 16 8 H 0.05 2.76 7.48 -2.91 -0.02 2.73 16 9 C 0.06 3.17 1.78 -11.82 -0.02 3.14 16 10 H 0.00 -0.11 7.80 -2.39 -0.02 -0.13 16 11 C -0.10 -5.13 4.58 28.93 0.13 -5.00 16 12 C -0.10 -3.97 5.38 28.74 0.15 -3.81 16 13 C 0.08 2.66 5.21 87.12 0.45 3.11 16 14 N -0.54 -18.65 4.15 -871.33 -3.61 -22.27 16 15 C 0.00 -0.13 5.21 44.92 0.23 0.11 16 16 C -0.17 -4.10 10.46 30.62 0.32 -3.78 16 17 C -0.16 -3.70 9.28 30.62 0.28 -3.41 16 18 C 0.08 2.88 5.44 86.36 0.47 3.35 16 19 C -0.10 -4.39 4.81 30.06 0.14 -4.24 16 20 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 21 H 0.02 1.01 7.60 -2.39 -0.02 0.99 16 22 H 0.05 2.94 5.86 -2.39 -0.01 2.92 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 25 H 0.04 1.22 6.79 -2.39 -0.02 1.20 16 26 H 0.08 2.37 6.41 -2.39 -0.02 2.35 16 27 H 0.10 2.32 7.96 -2.39 -0.02 2.30 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.21 7.72 -2.39 -0.02 2.20 16 32 H 0.04 1.27 7.90 -2.38 -0.02 1.25 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.26 7.53 -2.39 -0.02 2.24 16 35 H 0.04 1.79 6.67 -2.39 -0.02 1.77 16 Total: -1.00 -62.31 269.00 2.53 -59.79 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.04 Total: 9.83 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.83 Total: -39.86 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -3.37 Total: -76.62 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.31 2.53 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107226629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.892 kcal (2) G-P(sol) polarization free energy of solvation -62.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds